myRT

myRT report for GCA_001032585.1_Kleb_pneu_CHS185_V1

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Seq: KQ088854.1 Klebsiella pneumoniae strain CHS185 genomic scaffold aetAA-supercont1.1, whole genome shotgun sequence (3835835 bp)
Overview 1 RT 1: 10599-16184 bp 2 RT 2: 1212500-1218983 bp Neighborhood of RT #1 [10599, 16186] PinE RVT-GII PRK10276 umuC Neighborhood of RT #2 [1212500, 1218985] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 10599-11023 bp Feature: gene Location: 11089-11538 bp Feature: domain Description: PinE Location: 11098-11530 bp Feature: domain Description: PinE Location: 1 1 098-1 1 530 bp Feature: gene Location: 12933-14420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13338-14028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3338-1 4028 bp Feature: gene Location: 14413-14919 bp Feature: domain Description: PRK10276 Location: 14503-14914 bp Feature: domain Description: PRK1 0276 Location: 1 4503-1 491 4 bp Feature: gene Location: 14921-16186 bp Feature: domain Description: umuC Location: 14924-16184 bp Feature: domain Description: umuC Location: 1 4924-1 61 84 bp Feature: gene Location: 1212500-1213558 bp Feature: domain Description: YccC Location: 1212506-1213544 bp Feature: domain Description: YccC Location: 1 21 2506-1 21 3544 bp Feature: gene Location: 1213657-1214130 bp Feature: domain Description: PRK10016 Location: 1213660-1214119 bp Feature: domain Description: PRK1 001 6 Location: 1 21 3660-1 21 41 1 9 bp Feature: gene Location: 1214212-1215699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1214617-1215307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 461 7-1 21 5307 bp Feature: gene Location: 1216217-1217380 bp Feature: domain Description: dacD Location: 1216220-1217375 bp Feature: domain Description: dacD Location: 1 21 6220-1 21 7375 bp Feature: gene Location: 1217561-1218985 bp Feature: domain Description: SbcB Location: 1217567-1218983 bp Feature: domain Description: SbcB Location: 1 21 7567-1 21 8983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088856.1 Klebsiella pneumoniae strain CHS185 genomic scaffold aetAA-supercont1.3, whole genome shotgun sequence (138797 bp)
Overview 1 RT 1: 81213-86207 bp Neighborhood of RT #1 [81213, 86209] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 81213-82484 bp Feature: domain Description: umuC Location: 81216-82479 bp Feature: domain Description: umuC Location: 812 16-82 479 bp Feature: gene Location: 82484-82909 bp Feature: domain Description: PRK10276 Location: 82487-82895 bp Feature: domain Description: PRK102 76 Location: 82 487-82 895 bp Feature: gene Location: 83312-84799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83717-84407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83717-84407 bp Feature: gene Location: 85033-85263 bp Feature: gene Location: 85784-86209 bp Feature: domain Description: Antirestrict Location: 85919-86207 bp Feature: domain Description: Antirestrict Location: 85919-862 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088855.1 Klebsiella pneumoniae strain CHS185 genomic scaffold aetAA-supercont1.2, whole genome shotgun sequence (1517176 bp)
Overview 1 RT 1: 583558-586965 bp 2 RT 2: 1026580-1032185 bp 3 RT 3: 1371826-1377244 bp Neighborhood of RT #1 [583558, 587066] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1026580, 1032211] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1371826, 1377246] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 583558-584289 bp Feature: domain Description: Laminin_G_3 Location: 583879-584233 bp Feature: domain Description: Laminin_G_3 Location: 583 879-58423 3 bp Feature: gene Location: 584286-584495 bp Feature: gene Location: 584945-586432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585350-586040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5853 50-586040 bp Feature: gene Location: 586510-586749 bp Feature: gene Location: 586749-587066 bp Feature: domain Description: PRK10276 Location: 586755-586869 bp Feature: domain Description: PRK10276 Location: 586755-586869 bp Feature: domain Description: PRK10276 Location: 586896-586965 bp Feature: domain Description: PRK10276 Location: 586896-586965 bp Feature: gene Location: 1026580-1027143 bp Feature: domain Description: YbjK Location: 1026586-1027123 bp Feature: domain Description: YbjK Location: 1026586-1027123 bp Feature: gene Location: 1027266-1028318 bp Feature: domain Description: int Location: 1027269-1028268 bp Feature: domain Description: int Location: 1027269-1028268 bp Feature: gene Location: 1028734-1030221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029139-1029829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102913 9-1029829 bp Feature: gene Location: 1030320-1031264 bp Feature: gene Location: 1031276-1032211 bp Feature: domain Description: Phage_CI_repr Location: 1031360-1031543 bp Feature: domain Description: Phage_CI_repr Location: 103 13 60-103 1543 bp Feature: domain Description: Phage_CI_repr Location: 1031672-1031864 bp Feature: domain Description: Phage_CI_repr Location: 103 1672-103 1864 bp Feature: domain Description: Phage_CI_C Location: 1031891-1032185 bp Feature: domain Description: Phage_CI_C Location: 103 1891-103 2185 bp Feature: gene Location: 1371826-1372965 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1372009-1372909 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 13 72009-13 72909 bp Feature: gene Location: 1373136-1373378 bp Feature: domain Description: DinI Location: 1373187-1373367 bp Feature: domain Description: DinI Location: 13 73 187-13 73 3 67 bp Feature: gene Location: 1373993-1375480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374398-1375088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 743 98-13 75088 bp Feature: gene Location: 1375559-1375978 bp Feature: domain Description: PRK10276 Location: 1375562-1375973 bp Feature: domain Description: PRK10276 Location: 13 75562-13 75973 bp Feature: gene Location: 1375981-1377246 bp Feature: domain Description: umuC Location: 1375984-1377244 bp Feature: domain Description: umuC Location: 13 75984-13 77244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)