myRT

myRT report for GCA_001032605.1_Kleb_pneu_CHS186_V1

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Seq: KQ088880.1 Klebsiella pneumoniae strain CHS186 genomic scaffold aetge-supercont1.2, whole genome shotgun sequence (2115353 bp)
Overview 1 RT 1: 713377-719860 bp Neighborhood of RT #1 [713377, 719862] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 713377-714435 bp Feature: domain Description: YccC Location: 713383-714421 bp Feature: domain Description: YccC Location: 71 3383-71 4421 bp Feature: gene Location: 714534-715007 bp Feature: domain Description: PRK10016 Location: 714537-714996 bp Feature: domain Description: PRK1 001 6 Location: 71 4537-71 4996 bp Feature: gene Location: 715089-716573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715491-716181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 5491 -71 61 81 bp Feature: gene Location: 717094-718257 bp Feature: domain Description: dacD Location: 717097-718252 bp Feature: domain Description: dacD Location: 71 7097-71 8252 bp Feature: gene Location: 718438-719862 bp Feature: domain Description: SbcB Location: 718444-719860 bp Feature: domain Description: SbcB Location: 71 8444-71 9860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KQ088882.1 Klebsiella pneumoniae strain CHS186 genomic scaffold aetge-supercont1.4, whole genome shotgun sequence (167719 bp)
Overview 1 RT 1: 128052-133046 bp Neighborhood of RT #1 [128052, 133048] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 128052-129323 bp Feature: domain Description: umuC Location: 128055-129318 bp Feature: domain Description: umuC Location: 12 8055-12 9318 bp Feature: gene Location: 129323-129748 bp Feature: domain Description: PRK10276 Location: 129326-129734 bp Feature: domain Description: PRK102 76 Location: 12 932 6-12 9734 bp Feature: gene Location: 130154-131638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130556-131246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130556-1312 46 bp Feature: gene Location: 131872-132102 bp Feature: gene Location: 132623-133048 bp Feature: domain Description: Antirestrict Location: 132758-133046 bp Feature: domain Description: Antirestrict Location: 132 758-133046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ088883.1 Klebsiella pneumoniae strain CHS186 genomic scaffold aetge-supercont1.5, whole genome shotgun sequence (78779 bp)
Overview 1 RT 1: 37277-42630 bp Neighborhood of RT #1 [37277, 42767] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 37277-38548 bp Feature: domain Description: umuC Location: 37280-38540 bp Feature: domain Description: umuC Location: 3 7280-3 8540 bp Feature: gene Location: 38548-38979 bp Feature: domain Description: PRK10276 Location: 38599-38962 bp Feature: domain Description: PRK10276 Location: 3 8599-3 8962 bp Feature: gene Location: 39062-40546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39464-40154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9464-40154 bp Feature: gene Location: 41122-42093 bp Feature: domain Description: StbA Location: 41125-42070 bp Feature: domain Description: StbA Location: 41125-42070 bp Feature: gene Location: 42096-42767 bp Feature: domain Description: Plasmid_stab_B Location: 42111-42318 bp Feature: domain Description: Plasmid_stab_B Location: 42111-423 18 bp Feature: domain Description: Plasmid_stab_B Location: 42423-42630 bp Feature: domain Description: Plasmid_stab_B Location: 42423 -4263 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: KQ088879.1 Klebsiella pneumoniae strain CHS186 genomic scaffold aetge-supercont1.1, whole genome shotgun sequence (2547025 bp)
Overview 1 RT 1: 1525883-1531488 bp 2 RT 2: 1534433-1539940 bp 3 RT 3: 1871458-1876876 bp 4 RT 4: 2060359-2065687 bp Neighborhood of RT #1 [1525883, 1531514] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1534433, 1539945] dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1871458, 1876878] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [2060359, 2065689] DDE_Tnp_IS240 PinE RVT-GII PRK10276 umuC Feature: gene Location: 1525883-1526446 bp Feature: domain Description: YbjK Location: 1525889-1526426 bp Feature: domain Description: YbjK Location: 1525889-15264 26 bp Feature: gene Location: 1526569-1527621 bp Feature: domain Description: int Location: 1526572-1527571 bp Feature: domain Description: int Location: 1526572-1527571 bp Feature: gene Location: 1528040-1529524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1528442-1529132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15284 4 2-1529132 bp Feature: gene Location: 1529623-1530567 bp Feature: gene Location: 1530579-1531514 bp Feature: domain Description: Phage_CI_repr Location: 1530663-1530846 bp Feature: domain Description: Phage_CI_repr Location: 1530663-153084 6 bp Feature: domain Description: Phage_CI_repr Location: 1530975-1531167 bp Feature: domain Description: Phage_CI_repr Location: 1530975-1531167 bp Feature: domain Description: Phage_CI_C Location: 1531194-1531488 bp Feature: domain Description: Phage_CI_C Location: 1531194 -15314 88 bp Feature: gene Location: 1534433-1535038 bp Feature: domain Description: dam Location: 1534439-1534961 bp Feature: domain Description: dam Location: 1534 4 39-1534 961 bp Feature: gene Location: 1535035-1537449 bp Feature: domain Description: Phage_GPA Location: 1535599-1536565 bp Feature: domain Description: Phage_GPA Location: 1535599-1536565 bp Feature: gene Location: 1537928-1539412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1538330-1539020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1538330-1539020 bp Feature: gene Location: 1539513-1539701 bp Feature: gene Location: 1539712-1539945 bp Feature: domain Description: DinI Location: 1539754-1539940 bp Feature: domain Description: DinI Location: 1539754 -153994 0 bp Feature: gene Location: 1871458-1872597 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1871641-1872541 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 187164 1-187254 1 bp Feature: gene Location: 1872768-1873010 bp Feature: domain Description: DinI Location: 1872819-1872999 bp Feature: domain Description: DinI Location: 1872819-1872999 bp Feature: gene Location: 1873628-1875112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874030-1874720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874 030-1874 720 bp Feature: gene Location: 1875191-1875610 bp Feature: domain Description: PRK10276 Location: 1875194-1875605 bp Feature: domain Description: PRK10276 Location: 1875194 -1875605 bp Feature: gene Location: 1875613-1876878 bp Feature: domain Description: umuC Location: 1875616-1876876 bp Feature: domain Description: umuC Location: 1875616-1876876 bp Feature: gene Location: 2060359-2060526 bp Feature: domain Description: DDE_Tnp_IS240 Location: 2060362-2060458 bp Feature: domain Description: DDE_Tnp_IS24 0 Location: 2060362-20604 58 bp Feature: gene Location: 2060592-2061041 bp Feature: domain Description: PinE Location: 2060601-2061033 bp Feature: domain Description: PinE Location: 2060601-2061033 bp Feature: gene Location: 2062439-2063923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2062841-2063531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206284 1-2063531 bp Feature: gene Location: 2063916-2064422 bp Feature: domain Description: PRK10276 Location: 2064006-2064417 bp Feature: domain Description: PRK10276 Location: 2064 006-2064 4 17 bp Feature: gene Location: 2064424-2065689 bp Feature: domain Description: umuC Location: 2064427-2065687 bp Feature: domain Description: umuC Location: 2064 4 27-2065687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
umuC (PRK03609), DDE_Tnp_IS240 (pfam13610), PinE (COG1961)