myRT

myRT report for GCA_001032695.1_Kleb_pneu_CHS195_V1

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Seq: KQ088905.1 Klebsiella pneumoniae strain CHS195 genomic scaffold aetyZ-supercont1.2, whole genome shotgun sequence (1438674 bp)
Overview 1 RT 1: 884136-890619 bp Neighborhood of RT #1 [884136, 890621] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 884136-885194 bp Feature: domain Description: YccC Location: 884142-885180 bp Feature: domain Description: YccC Location: 8841 42-8851 80 bp Feature: gene Location: 885293-885766 bp Feature: domain Description: PRK10016 Location: 885296-885755 bp Feature: domain Description: PRK1 001 6 Location: 885296-885755 bp Feature: gene Location: 885848-887335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886253-886943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886253-886943 bp Feature: gene Location: 887853-889016 bp Feature: domain Description: dacD Location: 887856-889011 bp Feature: domain Description: dacD Location: 887856-88901 1 bp Feature: gene Location: 889197-890621 bp Feature: domain Description: SbcB Location: 889203-890619 bp Feature: domain Description: SbcB Location: 889203-89061 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KQ088904.1 Klebsiella pneumoniae strain CHS195 genomic scaffold aetyZ-supercont1.1, whole genome shotgun sequence (1721625 bp)
Overview 1 RT 1: 265169-268576 bp 2 RT 2: 709181-714786 bp 3 RT 3: 1052386-1057804 bp 4 RT 4: 1235913-1241778 bp Neighborhood of RT #1 [265169, 268677] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [709181, 714812] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1052386, 1057806] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1235913, 1241780] Rve PinE RVT-GII PRK10276 umuC Feature: gene Location: 265169-265900 bp Feature: domain Description: Laminin_G_3 Location: 265490-265844 bp Feature: domain Description: Laminin_G_3 Location: 2 65490-2 65844 bp Feature: gene Location: 265897-266106 bp Feature: gene Location: 266556-268043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266961-267651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 66961-2 67651 bp Feature: gene Location: 268121-268360 bp Feature: gene Location: 268360-268677 bp Feature: domain Description: PRK10276 Location: 268366-268480 bp Feature: domain Description: PRK102 76 Location: 2 68366-2 68480 bp Feature: domain Description: PRK10276 Location: 268507-268576 bp Feature: domain Description: PRK102 76 Location: 2 68507-2 68576 bp Feature: gene Location: 709181-709744 bp Feature: domain Description: YbjK Location: 709187-709724 bp Feature: domain Description: YbjK Location: 709187-70972 4 bp Feature: gene Location: 709867-710919 bp Feature: domain Description: int Location: 709870-710869 bp Feature: domain Description: int Location: 709870-710869 bp Feature: gene Location: 711335-712822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711740-712430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711740-712 430 bp Feature: gene Location: 712921-713865 bp Feature: gene Location: 713877-714812 bp Feature: domain Description: Phage_CI_repr Location: 713961-714144 bp Feature: domain Description: Phage_CI_repr Location: 713961-714144 bp Feature: domain Description: Phage_CI_repr Location: 714273-714465 bp Feature: domain Description: Phage_CI_repr Location: 7142 73-714465 bp Feature: domain Description: Phage_CI_C Location: 714492-714786 bp Feature: domain Description: Phage_CI_C Location: 714492 -714786 bp Feature: gene Location: 1052386-1053525 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1052569-1053469 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1052 569-1053469 bp Feature: gene Location: 1053696-1053938 bp Feature: domain Description: DinI Location: 1053747-1053927 bp Feature: domain Description: DinI Location: 1053747-105392 7 bp Feature: gene Location: 1054553-1056040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054958-1055648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054958-1055648 bp Feature: gene Location: 1056119-1056538 bp Feature: domain Description: PRK10276 Location: 1056122-1056533 bp Feature: domain Description: PRK102 76 Location: 105612 2 -1056533 bp Feature: gene Location: 1056541-1057806 bp Feature: domain Description: umuC Location: 1056544-1057804 bp Feature: domain Description: umuC Location: 1056544-1057804 bp Feature: gene Location: 1235913-1236617 bp Feature: domain Description: Rve Location: 1235916-1236561 bp Feature: domain Description: Rve Location: 12 35916-12 36561 bp Feature: gene Location: 1236683-1237132 bp Feature: domain Description: PinE Location: 1236692-1237124 bp Feature: domain Description: PinE Location: 12 36692 -12 3712 4 bp Feature: gene Location: 1238527-1240014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238932-1239622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 38932 -12 3962 2 bp Feature: gene Location: 1240007-1240513 bp Feature: domain Description: PRK10276 Location: 1240097-1240508 bp Feature: domain Description: PRK102 76 Location: 12 40097-12 40508 bp Feature: gene Location: 1240515-1241780 bp Feature: domain Description: umuC Location: 1240518-1241778 bp Feature: domain Description: umuC Location: 12 40518-12 41778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961)

Seq: KQ088914.1 Klebsiella pneumoniae strain CHS195 genomic scaffold aetyZ-supercont1.11, whole genome shotgun sequence (85414 bp)
Overview 1 RT 1: 24347-29700 bp Neighborhood of RT #1 [24347, 29837] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 24347-25618 bp Feature: domain Description: umuC Location: 24350-25610 bp Feature: domain Description: umuC Location: 243 50-25610 bp Feature: gene Location: 25618-26049 bp Feature: domain Description: PRK10276 Location: 25669-26032 bp Feature: domain Description: PRK10276 Location: 25669-2603 2 bp Feature: gene Location: 26132-27619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26537-27227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2653 7-27227 bp Feature: gene Location: 28192-29163 bp Feature: domain Description: StbA Location: 28195-29140 bp Feature: domain Description: StbA Location: 28195-29140 bp Feature: gene Location: 29166-29837 bp Feature: domain Description: Plasmid_stab_B Location: 29181-29388 bp Feature: domain Description: Plasmid_stab_B Location: 29181-293 88 bp Feature: domain Description: Plasmid_stab_B Location: 29493-29700 bp Feature: domain Description: Plasmid_stab_B Location: 29493 -29700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: KQ088910.1 Klebsiella pneumoniae strain CHS195 genomic scaffold aetyZ-supercont1.7, whole genome shotgun sequence (167807 bp)
Overview 1 RT 1: 32292-37286 bp Neighborhood of RT #1 [32292, 37288] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 32292-33563 bp Feature: domain Description: umuC Location: 32295-33558 bp Feature: domain Description: umuC Location: 32295-33558 bp Feature: gene Location: 33563-33988 bp Feature: domain Description: PRK10276 Location: 33566-33974 bp Feature: domain Description: PRK10276 Location: 33566-33974 bp Feature: gene Location: 34391-35878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34796-35486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 796-354 86 bp Feature: gene Location: 36112-36342 bp Feature: gene Location: 36863-37288 bp Feature: domain Description: Antirestrict Location: 36998-37286 bp Feature: domain Description: Antirestrict Location: 36998-37286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)