myRT

myRT report for GCA_001032735.1_Esch_coli_CHS199_V1

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Seq: KQ088930.1 Escherichia coli strain CHS199 genomic scaffold aeviY-supercont1.2, whole genome shotgun sequence (1974607 bp)
Overview 1 RT 1: 1949151-1953673 bp Neighborhood of RT #1 [1949151, 1953717] DUF1819 InsE RVT-GII GIIM PHA02517 HTH_Tnp_1 Feature: gene Location: 1949151-1949666 bp Ori: KME65558.1 Feature: domain Description: DUF1819 Location: 1949196-1949598 bp Feature: domain Description: DUF1 81 9 Location: 1 9491 96-1 949598 bp Feature: gene Location: 1949692-1949915 bp Ori: KME65559.1 Feature: domain Description: InsE Location: 1949695-1949908 bp Feature: domain Description: InsE Location: 1 949695-1 949908 bp Feature: gene Location: 1951383-1952906 bp Ori: KME65397.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1951656-1952388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 951 656-1 952388 bp Feature: domain Description: GIIM Note: maturase Location: 1952463-1952661 bp Feature: domain Description: GIIM Note: maturase Location: 1 952463-1 952661 bp Feature: gene Location: 1953098-1953469 bp Ori: KME65398.1 Feature: domain Description: PHA02517 Location: 1953101-1953467 bp Feature: domain Description: PHA0251 7 Location: 1 9531 01 -1 953467 bp Feature: gene Location: 1953472-1953717 bp Ori: KME65399.1 Feature: domain Description: HTH_Tnp_1 Location: 1953481-1953673 bp Feature: domain Description: HTH_Tnp_1 Location: 1 953481 -1 953673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1819 (pfam08849), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)

Seq: KQ088929.1 Escherichia coli strain CHS199 genomic scaffold aeviY-supercont1.1, whole genome shotgun sequence (2216053 bp)
Overview 1 RT 1: 621665-625937 bp 2 RT 2: 1074954-1080985 bp Neighborhood of RT #1 [621665, 625937] YesM RVT-GII GIIM group_II_RT_mat Neighborhood of RT #2 [1074954, 1081122] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 621665-622894 bp Ori: KME75838.1 Feature: domain Description: YesM Location: 622145-622886 bp Feature: domain Description: YesM Location: 62 2 145-62 2 886 bp Feature: gene Location: 622967-623155 bp Feature: gene Location: 623477-623959 bp Ori: KME75840.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623486-623726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 3486-62 372 6 bp Feature: domain Description: GIIM Note: maturase Location: 623774-623954 bp Feature: domain Description: GIIM Note: maturase Location: 62 3774-62 3954 bp Feature: gene Location: 624214-624546 bp Ori: KME75841.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 624376-624538 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 62 4376-62 4538 bp Feature: gene Location: 625032-625937 bp Feature: gene Location: 1074954-1075094 bp Ori: KME74089.1 Feature: domain Description: SfsB Location: 1074963-1075035 bp Feature: domain Description: SfsB Location: 1074963-1075035 bp Feature: gene Location: 1075091-1075561 bp Feature: gene Location: 1075908-1079117 bp Ori: KME74091.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1076436-1076925 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1076436-107692 5 bp Feature: domain Description: nitrilase Location: 1078431-1079028 bp Feature: domain Description: nitrilase Location: 1078431-107902 8 bp Feature: gene Location: 1079433-1080215 bp Ori: KME74092.1 Feature: domain Description: AbiEi_3_N Location: 1079445-1079706 bp Feature: domain Description: AbiEi_3_N Location: 1079445-1079706 bp Feature: domain Description: AbiEi_3 Location: 1079718-1080174 bp Feature: domain Description: AbiEi_3 Location: 1079718-1080174 bp Feature: gene Location: 1080202-1081122 bp Ori: KME74093.1 Feature: domain Description: AbiEii Location: 1080244-1080985 bp Feature: domain Description: AbiEii Location: 10802 44-1080985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)