myRT

myRT report for GCA_001032875.1_Kleb_pneu_CHS208_V1

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Seq: KQ088992.1 Klebsiella pneumoniae strain CHS208 genomic scaffold aetAC-supercont1.1, whole genome shotgun sequence (2965569 bp)
Overview 1 RT 1: 329908-336618 bp 2 RT 2: 774657-778826 bp 3 RT 3: 1011835-1016356 bp 4 RT 4: 1111475-1116893 bp 5 RT 5: 1288871-1294736 bp 6 RT 6: 2458276-2464759 bp Neighborhood of RT #1 [329908, 336809] Collar RVT-GII PRK10276 Neighborhood of RT #2 [774657, 778831] YbjK int RVT-GII DinI Neighborhood of RT #3 [1011835, 1016358] bssS PRK10597 RVT-GII PRK05451 PRK10598 Neighborhood of RT #4 [1111475, 1116895] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1288871, 1294738] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #6 [2458276, 2464761] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 329908-331077 bp Feature: domain Description: Collar Location: 330610-330781 bp Feature: domain Description: Collar Location: 33061 0-330781 bp Feature: gene Location: 331114-334272 bp Feature: gene Location: 334691-336175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335093-335783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335093-335783 bp Feature: gene Location: 336253-336492 bp Feature: gene Location: 336492-336809 bp Feature: domain Description: PRK10276 Location: 336498-336618 bp Feature: domain Description: PRK1 0276 Location: 336498-33661 8 bp Feature: gene Location: 774657-775220 bp Feature: domain Description: YbjK Location: 774663-775200 bp Feature: domain Description: YbjK Location: 774663-775200 bp Feature: gene Location: 775343-776395 bp Feature: domain Description: int Location: 775346-776345 bp Feature: domain Description: int Location: 775346-776345 bp Feature: gene Location: 776814-778298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777216-777906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77721 6-777906 bp Feature: gene Location: 778399-778587 bp Feature: gene Location: 778598-778831 bp Feature: domain Description: DinI Location: 778640-778826 bp Feature: domain Description: DinI Location: 778640-778826 bp Feature: gene Location: 1011835-1012089 bp Feature: domain Description: bssS Location: 1011838-1012087 bp Feature: domain Description: bssS Location: 1 01 1 838-1 01 2087 bp Feature: gene Location: 1012392-1012643 bp Feature: domain Description: PRK10597 Location: 1012395-1012632 bp Feature: domain Description: PRK1 0597 Location: 1 01 2395-1 01 2632 bp Feature: gene Location: 1013049-1014533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013451-1014141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 3451 -1 01 41 41 bp Feature: gene Location: 1014626-1015672 bp Feature: domain Description: PRK05451 Location: 1014641-1015667 bp Feature: domain Description: PRK05451 Location: 1 01 4641 -1 01 5667 bp Feature: gene Location: 1015798-1016358 bp Feature: domain Description: PRK10598 Location: 1015801-1016356 bp Feature: domain Description: PRK1 0598 Location: 1 01 5801 -1 01 6356 bp Feature: gene Location: 1111475-1112614 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1111658-1112558 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 1 1 1 658-1 1 1 2558 bp Feature: gene Location: 1112785-1113027 bp Feature: domain Description: DinI Location: 1112836-1113016 bp Feature: domain Description: DinI Location: 1 1 1 2836-1 1 1 301 6 bp Feature: gene Location: 1113645-1115129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114047-1114737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 4047-1 1 1 4737 bp Feature: gene Location: 1115208-1115627 bp Feature: domain Description: PRK10276 Location: 1115211-1115622 bp Feature: domain Description: PRK1 0276 Location: 1 1 1 521 1 -1 1 1 5622 bp Feature: gene Location: 1115630-1116895 bp Feature: domain Description: umuC Location: 1115633-1116893 bp Feature: domain Description: umuC Location: 1 1 1 5633-1 1 1 6893 bp Feature: gene Location: 1288871-1289575 bp Feature: domain Description: Rve Location: 1288874-1289519 bp Feature: domain Description: Rve Location: 1 288874-1 28951 9 bp Feature: gene Location: 1289641-1290090 bp Feature: domain Description: PinE Location: 1289650-1290082 bp Feature: domain Description: PinE Location: 1 289650-1 290082 bp Feature: gene Location: 1291488-1292972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1291890-1292580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 291 890-1 292580 bp Feature: gene Location: 1292965-1293471 bp Feature: domain Description: PRK10276 Location: 1293055-1293466 bp Feature: domain Description: PRK1 0276 Location: 1 293055-1 293466 bp Feature: gene Location: 1293473-1294738 bp Feature: domain Description: umuC Location: 1293476-1294736 bp Feature: domain Description: umuC Location: 1 293476-1 294736 bp Feature: gene Location: 2458276-2459334 bp Feature: domain Description: YccC Location: 2458282-2459320 bp Feature: domain Description: YccC Location: 2458282-2459320 bp Feature: gene Location: 2459433-2459906 bp Feature: domain Description: PRK10016 Location: 2459436-2459895 bp Feature: domain Description: PRK1 001 6 Location: 2459436-2459895 bp Feature: gene Location: 2459988-2461472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2460390-2461080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2460390-2461 080 bp Feature: gene Location: 2461993-2463156 bp Feature: domain Description: dacD Location: 2461996-2463151 bp Feature: domain Description: dacD Location: 2461 996-24631 51 bp Feature: gene Location: 2463337-2464761 bp Feature: domain Description: SbcB Location: 2463343-2464759 bp Feature: domain Description: SbcB Location: 2463343-2464759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collar (pfam07484), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), DinI (pfam06183), bssS (PRK12301), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10598 (lipoprotein; Provisional)
GT9_LPS_heptosyltransferase (cd03789), umuC (PRK03609), Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KQ088998.1 Klebsiella pneumoniae strain CHS208 genomic scaffold aetAC-supercont1.7, whole genome shotgun sequence (59715 bp)
Overview 1 RT 1: 24073-29125 bp Neighborhood of RT #1 [24073, 29136] DDE_Tnp_Tn3 Rve RVT-GII PHA02517 InsE Feature: gene Location: 24073-26364 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 25180-26338 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 5180-2 6338 bp Feature: gene Location: 26404-27108 bp Feature: domain Description: Rve Location: 26407-27052 bp Feature: domain Description: Rve Location: 2 6407-2 7052 bp Feature: gene Location: 27155-27790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27428-27773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 742 8-2 7773 bp Feature: gene Location: 28382-28621 bp Feature: domain Description: PHA02517 Location: 28385-28556 bp Feature: domain Description: PHA02 517 Location: 2 8385-2 8556 bp Feature: gene Location: 28834-29136 bp Feature: domain Description: InsE Location: 28843-29125 bp Feature: domain Description: InsE Location: 2 8843-2 912 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), Rve (COG3316), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: KQ088997.1 Klebsiella pneumoniae strain CHS208 genomic scaffold aetAC-supercont1.6, whole genome shotgun sequence (138318 bp)
Overview 1 RT 1: 80733-85727 bp Neighborhood of RT #1 [80733, 85729] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 80733-82004 bp Feature: domain Description: umuC Location: 80736-81999 bp Feature: domain Description: umuC Location: 8073 6-81999 bp Feature: gene Location: 82004-82429 bp Feature: domain Description: PRK10276 Location: 82007-82415 bp Feature: domain Description: PRK10276 Location: 82007-82415 bp Feature: gene Location: 82835-84319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83237-83927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 23 7-83 927 bp Feature: gene Location: 84553-84783 bp Feature: gene Location: 85304-85729 bp Feature: domain Description: Antirestrict Location: 85439-85727 bp Feature: domain Description: Antirestrict Location: 8543 9-85727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)