myRT

myRT report for GCA_001033055.1_Kleb_pneu_CHS218_V1

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Seq: KQ089060.1 Klebsiella pneumoniae strain CHS218 genomic scaffold aetgZ-supercont1.4, whole genome shotgun sequence (238828 bp)
Overview 1 RT 1: 10779-16132 bp 2 RT 2: 170291-175285 bp Neighborhood of RT #1 [10779, 16269] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [170291, 175287] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 10779-12050 bp Feature: domain Description: umuC Location: 10782-12042 bp Feature: domain Description: umuC Location: 1 0782-1 2042 bp Feature: gene Location: 12050-12481 bp Feature: domain Description: PRK10276 Location: 12101-12464 bp Feature: domain Description: PRK1 0276 Location: 1 21 01 -1 2464 bp Feature: gene Location: 12564-14051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12969-13659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2969-1 3659 bp Feature: gene Location: 14624-15595 bp Feature: domain Description: StbA Location: 14627-15572 bp Feature: domain Description: StbA Location: 1 4627-1 5572 bp Feature: gene Location: 15598-16269 bp Feature: domain Description: Plasmid_stab_B Location: 15613-15820 bp Feature: domain Description: Plasmid_stab_B Location: 1 561 3-1 5820 bp Feature: domain Description: Plasmid_stab_B Location: 15925-16132 bp Feature: domain Description: Plasmid_stab_B Location: 1 5925-1 61 32 bp Feature: gene Location: 170291-171562 bp Feature: domain Description: umuC Location: 170294-171557 bp Feature: domain Description: umuC Location: 1 70294-1 71 557 bp Feature: gene Location: 171562-171987 bp Feature: domain Description: PRK10276 Location: 171565-171973 bp Feature: domain Description: PRK1 0276 Location: 1 71 565-1 71 973 bp Feature: gene Location: 172390-173877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172795-173485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72795-1 73485 bp Feature: gene Location: 174111-174341 bp Feature: gene Location: 174862-175287 bp Feature: domain Description: Antirestrict Location: 174997-175285 bp Feature: domain Description: Antirestrict Location: 1 74997-1 75285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), Antirestrict (pfam03230)

Seq: KQ089057.1 Klebsiella pneumoniae strain CHS218 genomic scaffold aetgZ-supercont1.1, whole genome shotgun sequence (3480421 bp)
Overview 1 RT 1: 1028171-1033776 bp 2 RT 2: 1371675-1377093 bp 3 RT 3: 1560779-1566058 bp Neighborhood of RT #1 [1028171, 1033802] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1371675, 1377095] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [1560779, 1566060] PinE RVT-GII PRK10276 umuC Feature: gene Location: 1028171-1028734 bp Feature: domain Description: YbjK Location: 1028177-1028714 bp Feature: domain Description: YbjK Location: 102 8177-102 8714 bp Feature: gene Location: 1028857-1029909 bp Feature: domain Description: int Location: 1028860-1029859 bp Feature: domain Description: int Location: 102 8860-102 9859 bp Feature: gene Location: 1030325-1031812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030730-1031420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030730-103142 0 bp Feature: gene Location: 1031911-1032855 bp Feature: gene Location: 1032867-1033802 bp Feature: domain Description: Phage_CI_repr Location: 1032951-1033134 bp Feature: domain Description: Phage_CI_repr Location: 1032 951-1033134 bp Feature: domain Description: Phage_CI_repr Location: 1033263-1033455 bp Feature: domain Description: Phage_CI_repr Location: 10332 63-1033455 bp Feature: domain Description: Phage_CI_C Location: 1033482-1033776 bp Feature: domain Description: Phage_CI_C Location: 1033482 -1033776 bp Feature: gene Location: 1371675-1372814 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1371858-1372758 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1371858-1372 758 bp Feature: gene Location: 1372985-1373227 bp Feature: domain Description: DinI Location: 1373036-1373216 bp Feature: domain Description: DinI Location: 1373036-13732 16 bp Feature: gene Location: 1373842-1375329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374247-1374937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13742 47-1374937 bp Feature: gene Location: 1375408-1375827 bp Feature: domain Description: PRK10276 Location: 1375411-1375822 bp Feature: domain Description: PRK102 76 Location: 1375411-137582 2 bp Feature: gene Location: 1375830-1377095 bp Feature: domain Description: umuC Location: 1375833-1377093 bp Feature: domain Description: umuC Location: 1375833-1377093 bp Feature: gene Location: 1560779-1560897 bp Feature: gene Location: 1560963-1561412 bp Feature: domain Description: PinE Location: 1560972-1561404 bp Feature: domain Description: PinE Location: 1560972 -1561404 bp Feature: gene Location: 1562807-1564294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1563212-1563902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15632 12 -1563902 bp Feature: gene Location: 1564287-1564793 bp Feature: domain Description: PRK10276 Location: 1564377-1564788 bp Feature: domain Description: PRK102 76 Location: 1564377-1564788 bp Feature: gene Location: 1564795-1566060 bp Feature: domain Description: umuC Location: 1564798-1566058 bp Feature: domain Description: umuC Location: 1564798-1566058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PinE (COG1961)