myRT

myRT report for GCA_001033245.1_Kleb_pneu_CHS229_V1

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Seq: KQ089139.1 Klebsiella pneumoniae strain CHS229 genomic scaffold aeusa-supercont1.4, whole genome shotgun sequence (189312 bp)
Overview 1 RT 1: 108850-114375 bp 2 RT 2: 131726-136720 bp Neighborhood of RT #1 [108850, 114542] DDE_Tnp_IS1 BetT RVT-GII PRK09928 DUF2254 Neighborhood of RT #2 [131726, 136722] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 108850-109143 bp Feature: domain Description: DDE_Tnp_IS1 Location: 108853-109141 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 08853-1 091 41 bp Feature: gene Location: 109295-110773 bp Feature: domain Description: BetT Location: 109325-110765 bp Feature: domain Description: BetT Location: 1 09325-1 1 0765 bp Feature: gene Location: 110822-112306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111224-111914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 224-1 1 1 91 4 bp Feature: gene Location: 112705-113202 bp Feature: domain Description: PRK09928 Location: 112726-113200 bp Feature: domain Description: PRK09928 Location: 1 1 2726-1 1 3200 bp Feature: gene Location: 113265-114542 bp Feature: domain Description: DUF2254 Location: 113307-114375 bp Feature: domain Description: DUF2254 Location: 1 1 3307-1 1 4375 bp Feature: gene Location: 131726-132997 bp Feature: domain Description: umuC Location: 131729-132992 bp Feature: domain Description: umuC Location: 1 31 729-1 32992 bp Feature: gene Location: 132997-133422 bp Feature: domain Description: PRK10276 Location: 133000-133408 bp Feature: domain Description: PRK1 0276 Location: 1 33000-1 33408 bp Feature: gene Location: 133828-135312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134230-134920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34230-1 34920 bp Feature: gene Location: 135546-135776 bp Feature: gene Location: 136297-136722 bp Feature: domain Description: Antirestrict Location: 136432-136720 bp Feature: domain Description: Antirestrict Location: 1 36432-1 36720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), BetT (COG1292), RVT-GII, PRK09928 (choline transport protein BetT; Provisional), DUF2254 (pfam10011), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Antirestrict (pfam03230)

Seq: KQ089136.1 Klebsiella pneumoniae strain CHS229 genomic scaffold aeusa-supercont1.1, whole genome shotgun sequence (2988617 bp)
Overview 1 RT 1: 324874-331584 bp 2 RT 2: 769731-783011 bp 3 RT 3: 1016790-1021311 bp 4 RT 4: 1116430-1121848 bp 5 RT 5: 1293880-1299745 bp 6 RT 6: 2477715-2484198 bp Neighborhood of RT #1 [324874, 331775] Collar RVT-GII PRK10276 Neighborhood of RT #2 [769731, 783016] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1016790, 1021313] bssS PRK10597 RVT-GII PRK05451 PRK10598 Neighborhood of RT #4 [1116430, 1121850] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1293880, 1299747] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #6 [2477715, 2484200] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 324874-326043 bp Feature: domain Description: Collar Location: 325576-325747 bp Feature: domain Description: Collar Location: 32 5576-32 5747 bp Feature: gene Location: 326080-329238 bp Feature: gene Location: 329657-331141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330059-330749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330059-330749 bp Feature: gene Location: 331219-331458 bp Feature: gene Location: 331458-331775 bp Feature: domain Description: PRK10276 Location: 331464-331584 bp Feature: domain Description: PRK102 76 Location: 331464-331584 bp Feature: gene Location: 769731-770294 bp Feature: domain Description: YbjK Location: 769737-770274 bp Feature: domain Description: YbjK Location: 769737-7702 74 bp Feature: gene Location: 770417-771469 bp Feature: domain Description: int Location: 770420-771419 bp Feature: domain Description: int Location: 77042 0-771419 bp Feature: gene Location: 771888-773372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772290-772980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772 2 90-772 980 bp Feature: gene Location: 773471-774415 bp Feature: gene Location: 774427-775362 bp Feature: domain Description: Phage_CI_repr Location: 774511-774694 bp Feature: domain Description: Phage_CI_repr Location: 774511-774694 bp Feature: domain Description: Phage_CI_repr Location: 774823-775015 bp Feature: domain Description: Phage_CI_repr Location: 77482 3-775015 bp Feature: domain Description: Phage_CI_C Location: 775042-775336 bp Feature: domain Description: Phage_CI_C Location: 775042 -775336 bp Feature: gene Location: 777252-778109 bp Feature: domain Description: dam Location: 777255-778032 bp Feature: domain Description: dam Location: 7772 55-778032 bp Feature: gene Location: 778106-780520 bp Feature: domain Description: Phage_GPA Location: 778670-779636 bp Feature: domain Description: Phage_GPA Location: 778670-779636 bp Feature: gene Location: 780999-782483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781401-782091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781401-782 091 bp Feature: gene Location: 782584-782772 bp Feature: gene Location: 782783-783016 bp Feature: domain Description: DinI Location: 782825-783011 bp Feature: domain Description: DinI Location: 782 82 5-783011 bp Feature: gene Location: 1016790-1017044 bp Feature: domain Description: bssS Location: 1016793-1017042 bp Feature: domain Description: bssS Location: 1016793-1017042 bp Feature: gene Location: 1017347-1017598 bp Feature: domain Description: PRK10597 Location: 1017350-1017587 bp Feature: domain Description: PRK10597 Location: 1017350-1017587 bp Feature: gene Location: 1018004-1019488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1018406-1019096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1018406-1019096 bp Feature: gene Location: 1019581-1020627 bp Feature: domain Description: PRK05451 Location: 1019596-1020622 bp Feature: domain Description: PRK05451 Location: 1019596-102 062 2 bp Feature: gene Location: 1020753-1021313 bp Feature: domain Description: PRK10598 Location: 1020756-1021311 bp Feature: domain Description: PRK10598 Location: 102 0756-102 1311 bp Feature: gene Location: 1116430-1117569 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1116613-1117513 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1116613-1117513 bp Feature: gene Location: 1117740-1117982 bp Feature: domain Description: DinI Location: 1117791-1117971 bp Feature: domain Description: DinI Location: 1117791-1117971 bp Feature: gene Location: 1118600-1120084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119002-1119692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119002 -1119692 bp Feature: gene Location: 1120163-1120582 bp Feature: domain Description: PRK10276 Location: 1120166-1120577 bp Feature: domain Description: PRK102 76 Location: 112 0166-112 0577 bp Feature: gene Location: 1120585-1121850 bp Feature: domain Description: umuC Location: 1120588-1121848 bp Feature: domain Description: umuC Location: 112 0588-112 1848 bp Feature: gene Location: 1293880-1294584 bp Feature: domain Description: Rve Location: 1293883-1294528 bp Feature: domain Description: Rve Location: 12 93883-12 9452 8 bp Feature: gene Location: 1294650-1295099 bp Feature: domain Description: PinE Location: 1294659-1295091 bp Feature: domain Description: PinE Location: 12 94659-12 95091 bp Feature: gene Location: 1296497-1297981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1296899-1297589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 96899-12 97589 bp Feature: gene Location: 1297974-1298480 bp Feature: domain Description: PRK10276 Location: 1298064-1298475 bp Feature: domain Description: PRK102 76 Location: 12 98064-12 98475 bp Feature: gene Location: 1298482-1299747 bp Feature: domain Description: umuC Location: 1298485-1299745 bp Feature: domain Description: umuC Location: 12 98485-12 99745 bp Feature: gene Location: 2477715-2478773 bp Feature: domain Description: YccC Location: 2477721-2478759 bp Feature: domain Description: YccC Location: 2 47772 1-2 478759 bp Feature: gene Location: 2478872-2479345 bp Feature: domain Description: PRK10016 Location: 2478875-2479334 bp Feature: domain Description: PRK10016 Location: 2 478875-2 479334 bp Feature: gene Location: 2479427-2480911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479829-2480519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 47982 9-2 480519 bp Feature: gene Location: 2481432-2482595 bp Feature: domain Description: dacD Location: 2481435-2482590 bp Feature: domain Description: dacD Location: 2 481435-2 482 590 bp Feature: gene Location: 2482776-2484200 bp Feature: domain Description: SbcB Location: 2482782-2484198 bp Feature: domain Description: SbcB Location: 2 482 782 -2 484198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collar (pfam07484), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183)
bssS (PRK12301), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10598 (lipoprotein; Provisional), GT9_LPS_heptosyltransferase (cd03789), umuC (PRK03609), Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC)
dacD (PRK11397), SbcB (COG2925)