myRT

myRT report for GCA_001033525.1_Kleb_pneu_MGH89_V1

Download annotations/find similar RTs

Seq: KQ089365.1 Klebsiella pneumoniae strain MGH89 genomic scaffold aeurI-supercont1.1, whole genome shotgun sequence (4258389 bp)
Overview 1 RT 1: 338413-345850 bp 2 RT 2: 1104609-1110026 bp 3 RT 3: 2395342-2401824 bp 4 RT 4: 2536491-2542055 bp 5 RT 5: 3531302-3538815 bp Neighborhood of RT #1 [338413, 346041] End_tail_spike Acyl_transf_3 RVT-GII PRK10276 Neighborhood of RT #2 [1104609, 1110028] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [2395342, 2401826] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [2536491, 2542063] mglC PRK10982 RVT-GII PRK10982 PRK15395 Neighborhood of RT #5 [3531302, 3538829] RVT-Retrons DinI RVT-GII Phage_GPA PHA00080 Feature: gene Location: 338413-342279 bp Feature: domain Description: End_tail_spike Location: 341644-341770 bp Feature: domain Description: End_tail_spike Location: 341 644-341 770 bp Feature: gene Location: 342871-343437 bp Feature: domain Description: Acyl_transf_3 Location: 342889-343366 bp Feature: domain Description: Acyl_transf_3 Location: 342889-343366 bp Feature: gene Location: 343595-345082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344000-344690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344000-344690 bp Feature: gene Location: 345485-345724 bp Feature: gene Location: 345724-346041 bp Feature: domain Description: PRK10276 Location: 345730-345850 bp Feature: domain Description: PRK1 0276 Location: 345730-345850 bp Feature: gene Location: 1104609-1105748 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1104792-1105692 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 1 04792-1 1 05692 bp Feature: gene Location: 1105919-1106161 bp Feature: domain Description: DinI Location: 1105970-1106150 bp Feature: domain Description: DinI Location: 1 1 05970-1 1 061 50 bp Feature: gene Location: 1106775-1108262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107180-1107870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 071 80-1 1 07870 bp Feature: gene Location: 1108341-1108760 bp Feature: domain Description: PRK10276 Location: 1108344-1108755 bp Feature: domain Description: PRK1 0276 Location: 1 1 08344-1 1 08755 bp Feature: gene Location: 1108763-1110028 bp Feature: domain Description: umuC Location: 1108766-1110026 bp Feature: domain Description: umuC Location: 1 1 08766-1 1 1 0026 bp Feature: gene Location: 2395342-2396400 bp Feature: domain Description: YccC Location: 2395348-2396386 bp Feature: domain Description: YccC Location: 2395348-2396386 bp Feature: gene Location: 2396499-2396972 bp Feature: domain Description: PRK10016 Location: 2396502-2396961 bp Feature: domain Description: PRK1 001 6 Location: 2396502-2396961 bp Feature: gene Location: 2397054-2398541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2397459-2398149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2397459-23981 49 bp Feature: gene Location: 2399058-2400221 bp Feature: domain Description: dacD Location: 2399061-2400216 bp Feature: domain Description: dacD Location: 2399061 -240021 6 bp Feature: gene Location: 2400402-2401826 bp Feature: domain Description: SbcB Location: 2400408-2401824 bp Feature: domain Description: SbcB Location: 2400408-2401 824 bp Feature: gene Location: 2536491-2537501 bp Feature: domain Description: mglC Location: 2536494-2537499 bp Feature: domain Description: mglC Location: 2536494-2537499 bp Feature: gene Location: 2537517-2537984 bp Feature: domain Description: PRK10982 Location: 2537583-2537982 bp Feature: domain Description: PRK1 0982 Location: 2537583-2537982 bp Feature: gene Location: 2537977-2539464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2538382-2539072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2538382-2539072 bp Feature: gene Location: 2539777-2540946 bp Feature: domain Description: PRK10982 Location: 2539825-2540902 bp Feature: domain Description: PRK1 0982 Location: 2539825-2540902 bp Feature: gene Location: 2541065-2542063 bp Feature: domain Description: PRK15395 Location: 2541071-2542055 bp Feature: domain Description: PRK1 5395 Location: 2541 071 -2542055 bp Feature: gene Location: 3531302-3531496 bp Feature: gene Location: 3531636-3531995 bp Feature: gene Location: 3532065-3533015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3532245-3532788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3532245-3532788 bp Feature: gene Location: 3533338-3533493 bp Feature: gene Location: 3533922-3534335 bp Feature: domain Description: DinI Location: 3534150-3534333 bp Feature: domain Description: DinI Location: 35341 50-3534333 bp Feature: gene Location: 3534440-3535927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3534845-3535535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3534845-3535535 bp Feature: gene Location: 3536390-3538513 bp Feature: domain Description: Phage_GPA Location: 3536714-3537656 bp Feature: domain Description: Phage_GPA Location: 353671 4-3537656 bp Feature: gene Location: 3538608-3538829 bp Feature: domain Description: PHA00080 Location: 3538614-3538815 bp Feature: domain Description: PHA00080 Location: 353861 4-353881 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT End_tail_spike (pfam12219), Acyl_transf_3 (pfam01757), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397)
SbcB (COG2925), mglC (PRK09478), PRK10982 (galactose/methyl galaxtoside transporter ATP-binding protein; Provisional), PRK15395 (galactose/glucose ABC transporter substrate-binding protein MglB), RVT-Retrons, Phage_GPA (pfam05840), PHA00080 (DksA-like zinc finger domain containing protein)

Seq: KQ089368.1 Klebsiella pneumoniae strain MGH89 genomic scaffold aeurI-supercont1.4, whole genome shotgun sequence (157786 bp)
Overview 1 RT 1: 35572-40926 bp Neighborhood of RT #1 [35572, 41063] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 35572-36843 bp Feature: domain Description: umuC Location: 35575-36835 bp Feature: domain Description: umuC Location: 35575-36835 bp Feature: gene Location: 36843-37274 bp Feature: domain Description: PRK10276 Location: 36894-37257 bp Feature: domain Description: PRK102 76 Location: 36894-372 57 bp Feature: gene Location: 37682-39169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38087-38777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38087-38777 bp Feature: gene Location: 39418-40389 bp Feature: domain Description: StbA Location: 39421-40366 bp Feature: domain Description: StbA Location: 3942 1-40366 bp Feature: gene Location: 40392-41063 bp Feature: domain Description: Plasmid_stab_B Location: 40407-40614 bp Feature: domain Description: Plasmid_stab_B Location: 40407-40614 bp Feature: domain Description: Plasmid_stab_B Location: 40719-40926 bp Feature: domain Description: Plasmid_stab_B Location: 40719-4092 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)