myRT

myRT report for GCA_001033615.1_Kleb_pneu_MGH94_V1

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Seq: KQ089417.1 Klebsiella pneumoniae strain MGH94 genomic scaffold aeusg-supercont1.1, whole genome shotgun sequence (5424551 bp)
Overview 1 RT 1: 1300836-1307711 bp 2 RT 2: 1377547-1381815 bp 3 RT 3: 2645633-2653902 bp 4 RT 4: 2861885-2868367 bp 5 RT 5: 5224625-5230126 bp Neighborhood of RT #1 [1300836, 1307836] FhlA EAL YncE YncE RVT-GII PRK10597 LexA_DNA_bind Neighborhood of RT #2 [1377547, 1381838] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [2645633, 2653902] N_methyl PilS RVT-GII PRK13889 Neighborhood of RT #4 [2861885, 2868369] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #5 [5224625, 5230137] SfsB HTH_XRE RVT-UG2 traC_PFL_4706 Feature: gene Location: 1300836-1302599 bp Ori: KMG99980.1 Feature: domain Description: FhlA Location: 1300905-1301298 bp Feature: domain Description: FhlA Location: 1 300905-1 301 298 bp Feature: domain Description: EAL Location: 1301841-1302555 bp Feature: domain Description: EAL Location: 1 301 841 -1 302555 bp Feature: gene Location: 1302943-1304304 bp Ori: KMG99981.1 Feature: domain Description: YncE Location: 1303351-1303759 bp Feature: domain Description: YncE Location: 1 303351 -1 303759 bp Feature: domain Description: YncE Location: 1303828-1304248 bp Feature: domain Description: YncE Location: 1 303828-1 304248 bp Feature: gene Location: 1305305-1306789 bp Ori: KMG99982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1305707-1306397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 305707-1 306397 bp Feature: gene Location: 1306868-1307101 bp Ori: KMG99983.1 Feature: domain Description: PRK10597 Location: 1306871-1307096 bp Feature: domain Description: PRK1 0597 Location: 1 306871 -1 307096 bp Feature: gene Location: 1307444-1307836 bp Ori: KMG99984.1 Feature: domain Description: LexA_DNA_bind Location: 1307522-1307711 bp Feature: domain Description: LexA_DNA_bind Location: 1 307522-1 30771 1 bp Feature: gene Location: 1377547-1378686 bp Ori: KMH00218.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1377730-1378630 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 377730-1 378630 bp Feature: gene Location: 1378857-1379099 bp Ori: KMH00219.1 Feature: domain Description: DinI Location: 1378908-1379088 bp Feature: domain Description: DinI Location: 1 378908-1 379088 bp Feature: gene Location: 1379716-1381200 bp Ori: KMH00220.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1380118-1380808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3801 1 8-1 380808 bp Feature: gene Location: 1381279-1381698 bp Ori: KMH00221.1 Feature: domain Description: PRK10276 Location: 1381282-1381693 bp Feature: domain Description: PRK1 0276 Location: 1 381 282-1 381 693 bp Feature: gene Location: 1381701-1381838 bp Ori: KMH00222.1 Feature: domain Description: umuC Location: 1381704-1381815 bp Feature: domain Description: umuC Location: 1 381 704-1 381 81 5 bp Feature: gene Location: 2645633-2646202 bp Ori: KMG97651.1 Feature: domain Description: N_methyl Location: 2645663-2645741 bp Feature: domain Description: N_methyl Location: 2645663-2645741 bp Feature: domain Description: PilS Location: 2645771-2646197 bp Feature: domain Description: PilS Location: 2645771 -26461 97 bp Feature: gene Location: 2646836-2647507 bp Feature: gene Location: 2649075-2650559 bp Ori: KMG97653.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649477-2650167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649477-26501 67 bp Feature: gene Location: 2652073-2653593 bp Ori: KMG97654.1 Feature: domain Description: PRK13889 Location: 2652076-2652655 bp Feature: domain Description: PRK1 3889 Location: 2652076-2652655 bp Feature: gene Location: 2653687-2653902 bp Feature: gene Location: 2861885-2862943 bp Ori: KMG97807.1 Feature: domain Description: YccC Location: 2861891-2862929 bp Feature: domain Description: YccC Location: 2861 891 -2862929 bp Feature: gene Location: 2863042-2863515 bp Ori: KMG97808.1 Feature: domain Description: PRK10016 Location: 2863045-2863504 bp Feature: domain Description: PRK1 001 6 Location: 2863045-2863504 bp Feature: gene Location: 2863597-2865081 bp Ori: KMG97809.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2863999-2864689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2863999-2864689 bp Feature: gene Location: 2865601-2866764 bp Ori: KMG97810.1 Feature: domain Description: dacD Location: 2865604-2866759 bp Feature: domain Description: dacD Location: 2865604-2866759 bp Feature: gene Location: 2866945-2868369 bp Ori: KMG97811.1 Feature: domain Description: SbcB Location: 2866951-2868367 bp Feature: domain Description: SbcB Location: 2866951 -2868367 bp Feature: gene Location: 5224625-5224900 bp Ori: KMG93556.1 Feature: domain Description: SfsB Location: 5224634-5224859 bp Feature: domain Description: SfsB Location: 5224634-5224859 bp Feature: gene Location: 5225317-5225544 bp Ori: KMG93557.1 Feature: domain Description: HTH_XRE Location: 5225359-5225521 bp Feature: domain Description: HTH_XRE Location: 5225359-5225521 bp Feature: gene Location: 5225742-5227019 bp Ori: KMG93558.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5225940-5226726 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5225940-5226726 bp Feature: gene Location: 5227212-5227367 bp Feature: gene Location: 5227507-5230137 bp Ori: KMG93560.1 Feature: domain Description: traC_PFL_4706 Location: 5227546-5230126 bp Feature: domain Description: traC_PFL_4706 Location: 5227546-52301 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FhlA (COG3604), EAL (smart00052), YncE (COG3391), RVT-GII, PRK10597 (DNA damage-inducible protein I; Provisional), LexA_DNA_bind (pfam01726), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)
N_methyl (pfam07963), PilS (pfam08805), PRK13889 (conjugal transfer relaxase TraA; Provisional), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), SfsB (COG3423), HTH_XRE (smart00530), RVT-UG2
traC_PFL_4706 (TIGR03744)