myRT

myRT report for GCA_001033835.1_Kleb_pneu_MGH115_V1

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Seq: KQ089542.1 Klebsiella pneumoniae strain MGH115 genomic scaffold aeuro-supercont1.2, whole genome shotgun sequence (198000 bp)
Overview 1 RT 1: 190831-195843 bp Neighborhood of RT #1 [190831, 195843] INT_Cre_C RVT-GII HHA Feature: gene Location: 190831-191148 bp Feature: gene Location: 191214-192350 bp Ori: KMH52824.1 Feature: domain Description: INT_Cre_C Location: 191637-192291 bp Feature: domain Description: INT_Cre_C Location: 1 91 637-1 92291 bp Feature: gene Location: 192436-193920 bp Ori: KMH52825.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192838-193528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 92838-1 93528 bp Feature: gene Location: 194436-194690 bp Ori: KMH52826.1 Feature: domain Description: HHA Location: 194487-194670 bp Feature: domain Description: HHA Location: 1 94487-1 94670 bp Feature: gene Location: 194776-195843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: KQ089541.1 Klebsiella pneumoniae strain MGH115 genomic scaffold aeuro-supercont1.1, whole genome shotgun sequence (5392201 bp)
Overview 1 RT 1: 1316048-1320883 bp 2 RT 2: 1452482-1457417 bp 3 RT 3: 2645083-2649034 bp 4 RT 4: 3798892-3807477 bp Neighborhood of RT #1 [1316048, 1320885] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [1452482, 1457419] DDE_Tnp_IS1 Q RVT-GII PRK10276 umuC Neighborhood of RT #3 [2645083, 2649034] RVT-GII Neighborhood of RT #4 [3798892, 3807494] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 1316048-1316605 bp Ori: KMH60605.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1316129-1316552 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 131612 9-1316552 bp Feature: gene Location: 1316776-1317018 bp Ori: KMH60606.1 Feature: domain Description: DinI Location: 1316827-1317007 bp Feature: domain Description: DinI Location: 131682 7-1317007 bp Feature: gene Location: 1317635-1319119 bp Ori: KMH60607.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318037-1318727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318037-131872 7 bp Feature: gene Location: 1319198-1319617 bp Ori: KMH60608.1 Feature: domain Description: PRK10276 Location: 1319201-1319612 bp Feature: domain Description: PRK102 76 Location: 13192 01-1319612 bp Feature: gene Location: 1319620-1320885 bp Ori: KMH60609.1 Feature: domain Description: umuC Location: 1319623-1320883 bp Feature: domain Description: umuC Location: 131962 3-132 0883 bp Feature: gene Location: 1452482-1452859 bp Ori: KMH60741.1 Feature: domain Description: DDE_Tnp_IS1 Location: 1452485-1452857 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1452 485-1452 857 bp Feature: gene Location: 1453274-1453672 bp Ori: KMH60742.1 Feature: domain Description: Q Location: 1453277-1453664 bp Feature: domain Description: Q Location: 14532 77-1453664 bp Feature: gene Location: 1454170-1455654 bp Ori: KMH60743.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1454572-1455262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1454572 -14552 62 bp Feature: gene Location: 1455733-1456152 bp Ori: KMH60744.1 Feature: domain Description: PRK10276 Location: 1455736-1456147 bp Feature: domain Description: PRK102 76 Location: 1455736-1456147 bp Feature: gene Location: 1456154-1457419 bp Ori: KMH60745.1 Feature: domain Description: umuC Location: 1456157-1457417 bp Feature: domain Description: umuC Location: 1456157-1457417 bp Feature: gene Location: 2645083-2645958 bp Feature: gene Location: 2645991-2646095 bp Feature: gene Location: 2646173-2647657 bp Ori: KMH56601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646575-2647265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 646575-2 6472 65 bp Feature: gene Location: 2648098-2648271 bp Feature: gene Location: 2648282-2649034 bp Feature: gene Location: 3798892-3799572 bp Ori: KMH57653.1 Feature: domain Description: YqgA Location: 3798895-3799567 bp Feature: domain Description: YqgA Location: 3798895-3799567 bp Feature: gene Location: 3800390-3801253 bp Ori: KMH57654.1 Feature: domain Description: PRK09692 Location: 3800414-3801251 bp Feature: domain Description: PRK09692 Location: 3800414-38012 51 bp Feature: gene Location: 3802011-3804092 bp Ori: KMH57655.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3802422-3802866 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3802 42 2 -3802 866 bp Feature: gene Location: 3804089-3806683 bp Ori: KMH57656.1 Feature: domain Description: FimD Location: 3804131-3806672 bp Feature: domain Description: FimD Location: 3804131-3806672 bp Feature: gene Location: 3806730-3807494 bp Ori: KMH57657.1 Feature: domain Description: FimC Location: 3806775-3807477 bp Feature: domain Description: FimC Location: 3806775-3807477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), DDE_Tnp_IS1 (pfam03400), Q (PHA02536), YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4
FimD (COG3188), FimC (COG3121)