myRT

myRT report for GCA_001033885.1_Kleb_pneu_MGH117_V1

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Seq: KQ089553.1 Klebsiella pneumoniae strain MGH117 genomic scaffold aeusB-supercont1.3, whole genome shotgun sequence (190224 bp)
Overview 1 RT 1: 177078-182090 bp Neighborhood of RT #1 [177078, 182090] INT_Cre_C RVT-GII HHA Feature: gene Location: 177078-177395 bp Feature: gene Location: 177461-178597 bp Ori: KMH65366.1 Feature: domain Description: INT_Cre_C Location: 177884-178538 bp Feature: domain Description: INT_Cre_C Location: 1 77884-1 78538 bp Feature: gene Location: 178683-180167 bp Ori: KMH65367.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179085-179775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79085-1 79775 bp Feature: gene Location: 180683-180937 bp Ori: KMH65368.1 Feature: domain Description: HHA Location: 180734-180917 bp Feature: domain Description: HHA Location: 1 80734-1 8091 7 bp Feature: gene Location: 181023-182090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: KQ089551.1 Klebsiella pneumoniae strain MGH117 genomic scaffold aeusB-supercont1.1, whole genome shotgun sequence (5415131 bp)
Overview 1 RT 1: 1334727-1339562 bp 2 RT 2: 1471161-1476096 bp 3 RT 3: 2668693-2672644 bp 4 RT 4: 3823640-3832225 bp Neighborhood of RT #1 [1334727, 1339564] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [1471161, 1476098] DDE_Tnp_IS1 Q RVT-GII PRK10276 umuC Neighborhood of RT #3 [2668693, 2672644] RVT-GII Neighborhood of RT #4 [3823640, 3832242] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 1334727-1335284 bp Ori: KMH73617.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1334808-1335231 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1334808-13352 31 bp Feature: gene Location: 1335455-1335697 bp Ori: KMH73618.1 Feature: domain Description: DinI Location: 1335506-1335686 bp Feature: domain Description: DinI Location: 1335506-1335686 bp Feature: gene Location: 1336314-1337798 bp Ori: KMH73619.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336716-1337406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336716-1337406 bp Feature: gene Location: 1337877-1338296 bp Ori: KMH73620.1 Feature: domain Description: PRK10276 Location: 1337880-1338291 bp Feature: domain Description: PRK102 76 Location: 1337880-13382 91 bp Feature: gene Location: 1338299-1339564 bp Ori: KMH73621.1 Feature: domain Description: umuC Location: 1338302-1339562 bp Feature: domain Description: umuC Location: 1338302 -1339562 bp Feature: gene Location: 1471161-1471538 bp Ori: KMH73753.1 Feature: domain Description: DDE_Tnp_IS1 Location: 1471164-1471536 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1471164-1471536 bp Feature: gene Location: 1471953-1472351 bp Ori: KMH73754.1 Feature: domain Description: Q Location: 1471956-1472343 bp Feature: domain Description: Q Location: 1471956-1472 343 bp Feature: gene Location: 1472849-1474333 bp Ori: KMH73755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473251-1473941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14732 51-1473941 bp Feature: gene Location: 1474412-1474831 bp Ori: KMH73756.1 Feature: domain Description: PRK10276 Location: 1474415-1474826 bp Feature: domain Description: PRK102 76 Location: 1474415-147482 6 bp Feature: gene Location: 1474833-1476098 bp Ori: KMH73757.1 Feature: domain Description: umuC Location: 1474836-1476096 bp Feature: domain Description: umuC Location: 1474836-1476096 bp Feature: gene Location: 2668693-2669568 bp Feature: gene Location: 2669601-2669705 bp Feature: gene Location: 2669783-2671267 bp Ori: KMH70048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2670185-2670875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 670185-2 670875 bp Feature: gene Location: 2671708-2671881 bp Feature: gene Location: 2671892-2672644 bp Feature: gene Location: 3823640-3824320 bp Ori: KMH69221.1 Feature: domain Description: YqgA Location: 3823643-3824315 bp Feature: domain Description: YqgA Location: 382 3643-382 4315 bp Feature: gene Location: 3825138-3826001 bp Ori: KMH69222.1 Feature: domain Description: PRK09692 Location: 3825162-3825999 bp Feature: domain Description: PRK09692 Location: 382 5162 -382 5999 bp Feature: gene Location: 3826759-3828840 bp Ori: KMH69223.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3827170-3827614 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 382 7170-382 7614 bp Feature: gene Location: 3828837-3831431 bp Ori: KMH69224.1 Feature: domain Description: FimD Location: 3828879-3831420 bp Feature: domain Description: FimD Location: 382 8879-383142 0 bp Feature: gene Location: 3831478-3832242 bp Ori: KMH69225.1 Feature: domain Description: FimC Location: 3831523-3832225 bp Feature: domain Description: FimC Location: 383152 3-3832 2 2 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), DDE_Tnp_IS1 (pfam03400), Q (PHA02536), YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4
FimD (COG3188), FimC (COG3121)