myRT

myRT report for GCA_001033995.1_Kleb_pneu_BIDMC85_V1

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Seq: KQ089623.1 Klebsiella pneumoniae strain BIDMC85 genomic scaffold aeurh-supercont1.3, whole genome shotgun sequence (227924 bp)
Overview 1 RT 1: 212848-217778 bp Neighborhood of RT #1 [212848, 217786] INT_Cre_C RVT-GII DDE_Tnp_1_5 Feature: gene Location: 212848-213165 bp Feature: gene Location: 213231-214367 bp Ori: KMH95709.1 Feature: domain Description: INT_Cre_C Location: 213654-214308 bp Feature: domain Description: INT_Cre_C Location: 21 3654-21 4308 bp Feature: gene Location: 214453-215940 bp Ori: KMH95710.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214858-215548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4858-21 5548 bp Feature: gene Location: 216863-217003 bp Feature: gene Location: 217388-217786 bp Ori: KMH95712.1 Feature: domain Description: DDE_Tnp_1_5 Location: 217445-217778 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 21 7445-21 7778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, DDE_Tnp_1_5 (pfam13737)

Seq: KQ089622.1 Klebsiella pneumoniae strain BIDMC85 genomic scaffold aeurh-supercont1.2, whole genome shotgun sequence (423694 bp)
Overview 1 RT 1: 338254-343755 bp Neighborhood of RT #1 [338254, 343766] SfsB HTH_XRE RVT-UG2 traC_PFL_4706 Feature: gene Location: 338254-338529 bp Ori: KMH99344.1 Feature: domain Description: SfsB Location: 338263-338488 bp Feature: domain Description: SfsB Location: 3382 63-338488 bp Feature: gene Location: 338946-339173 bp Ori: KMH99345.1 Feature: domain Description: HTH_XRE Location: 338988-339150 bp Feature: domain Description: HTH_XRE Location: 338988-339150 bp Feature: gene Location: 339371-340648 bp Ori: KMH99346.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 339569-340355 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 339569-340355 bp Feature: gene Location: 340841-340996 bp Feature: gene Location: 341136-343766 bp Ori: KMH99348.1 Feature: domain Description: traC_PFL_4706 Location: 341175-343755 bp Feature: domain Description: traC_PFL_4706 Location: 341175-343755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), HTH_XRE (smart00530), RVT-UG2, traC_PFL_4706 (TIGR03744)

Seq: KQ089621.1 Klebsiella pneumoniae strain BIDMC85 genomic scaffold aeurh-supercont1.1, whole genome shotgun sequence (4567076 bp)
Overview 1 RT 1: 1306833-1313708 bp 2 RT 2: 1383544-1388961 bp 3 RT 3: 2785877-2792359 bp Neighborhood of RT #1 [1306833, 1313833] FhlA EAL YncE YncE RVT-GII PRK10597 LexA_DNA_bind Neighborhood of RT #2 [1383544, 1388963] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [2785877, 2792361] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1306833-1308596 bp Ori: KMI15790.1 Feature: domain Description: FhlA Location: 1306902-1307295 bp Feature: domain Description: FhlA Location: 13 06902-13 07295 bp Feature: domain Description: EAL Location: 1307838-1308552 bp Feature: domain Description: EAL Location: 13 0783 8-13 08552 bp Feature: gene Location: 1308940-1310301 bp Ori: KMI15791.1 Feature: domain Description: YncE Location: 1309348-1309756 bp Feature: domain Description: YncE Location: 13 093 48-13 09756 bp Feature: domain Description: YncE Location: 1309825-1310245 bp Feature: domain Description: YncE Location: 13 09825-13 10245 bp Feature: gene Location: 1311299-1312786 bp Ori: KMI15792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1311704-1312394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 11704-13 123 94 bp Feature: gene Location: 1312865-1313098 bp Ori: KMI15793.1 Feature: domain Description: PRK10597 Location: 1312868-1313093 bp Feature: domain Description: PRK10597 Location: 13 12868-13 13 093 bp Feature: gene Location: 1313441-1313833 bp Ori: KMI15794.1 Feature: domain Description: LexA_DNA_bind Location: 1313519-1313708 bp Feature: domain Description: LexA_DNA_bind Location: 13 13 519-13 13 708 bp Feature: gene Location: 1383544-1384683 bp Ori: KMI15863.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1383727-1384627 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 13 83 727-13 84627 bp Feature: gene Location: 1384854-1385096 bp Ori: KMI15864.1 Feature: domain Description: DinI Location: 1384905-1385085 bp Feature: domain Description: DinI Location: 13 84905-13 85085 bp Feature: gene Location: 1385710-1387197 bp Ori: KMI15865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386115-1386805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 86115-13 86805 bp Feature: gene Location: 1387276-1387695 bp Ori: KMI15866.1 Feature: domain Description: PRK10276 Location: 1387279-1387690 bp Feature: domain Description: PRK10276 Location: 13 87279-13 87690 bp Feature: gene Location: 1387698-1388963 bp Ori: KMI15867.1 Feature: domain Description: umuC Location: 1387701-1388961 bp Feature: domain Description: umuC Location: 13 87701-13 88961 bp Feature: gene Location: 2785877-2786935 bp Ori: KMI06422.1 Feature: domain Description: YccC Location: 2785883-2786921 bp Feature: domain Description: YccC Location: 2785883 -2786921 bp Feature: gene Location: 2787034-2787507 bp Ori: KMI06423.1 Feature: domain Description: PRK10016 Location: 2787037-2787496 bp Feature: domain Description: PRK10016 Location: 278703 7-2787496 bp Feature: gene Location: 2787589-2789076 bp Ori: KMI06424.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787994-2788684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787994-2788684 bp Feature: gene Location: 2789593-2790756 bp Ori: KMI06425.1 Feature: domain Description: dacD Location: 2789596-2790751 bp Feature: domain Description: dacD Location: 2789596-2790751 bp Feature: gene Location: 2790937-2792361 bp Ori: KMI06426.1 Feature: domain Description: SbcB Location: 2790943-2792359 bp Feature: domain Description: SbcB Location: 2790943 -27923 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FhlA (COG3604), EAL (smart00052), YncE (COG3391), RVT-GII, PRK10597 (DNA damage-inducible protein I; Provisional), LexA_DNA_bind (pfam01726), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)
YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)