myRT

myRT report for GCA_001034055.1_Kleb_pneu_BIDMC89_V1

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Seq: KQ089635.1 Klebsiella pneumoniae strain BIDMC89 genomic scaffold aeurn-supercont1.3, whole genome shotgun sequence (336060 bp)
Overview 1 RT 1: 27783-33126 bp Neighborhood of RT #1 [27783, 33263] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 27783-29054 bp Ori: KMI15018.1 Feature: domain Description: umuC Location: 27786-29049 bp Feature: domain Description: umuC Location: 27786-29049 bp Feature: gene Location: 29054-29479 bp Ori: KMI15019.1 Feature: domain Description: PRK10276 Location: 29057-29465 bp Feature: domain Description: PRK1 0276 Location: 29057-29465 bp Feature: gene Location: 29885-31369 bp Ori: KMI15020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30287-30977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30287-30977 bp Feature: gene Location: 31618-32589 bp Ori: KMI15021.1 Feature: domain Description: StbA Location: 31621-32566 bp Feature: domain Description: StbA Location: 31 621 -32566 bp Feature: gene Location: 32592-33263 bp Ori: KMI15022.1 Feature: domain Description: Plasmid_stab_B Location: 32607-32814 bp Feature: domain Description: Plasmid_stab_B Location: 32607-3281 4 bp Feature: domain Description: Plasmid_stab_B Location: 32919-33126 bp Feature: domain Description: Plasmid_stab_B Location: 3291 9-331 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: KQ089633.1 Klebsiella pneumoniae strain BIDMC89 genomic scaffold aeurn-supercont1.1, whole genome shotgun sequence (4622145 bp)
Overview 1 RT 1: 3398467-3402955 bp 2 RT 2: 4467215-4472186 bp Neighborhood of RT #1 [3398467, 3403119] PRK09692 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #2 [4467215, 4472191] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu PRK00872 Feature: gene Location: 3398467-3398889 bp Ori: KMI17449.1 Feature: domain Description: PRK09692 Location: 3398470-3398851 bp Feature: domain Description: PRK09692 Location: 3398470-3398851 bp Feature: gene Location: 3398891-3399532 bp Feature: gene Location: 3399958-3400923 bp Ori: KMI17451.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3400066-3400663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3400066-3400663 bp Feature: gene Location: 3400901-3402493 bp Ori: KMI17452.1 Feature: domain Description: COG3950 Location: 3401081-3402302 bp Feature: domain Description: COG3950 Location: 3401081-3402 302 bp Feature: gene Location: 3402490-3403119 bp Ori: KMI17453.1 Feature: domain Description: TIGR02646 Location: 3402580-3402955 bp Feature: domain Description: TIGR02 646 Location: 3402 580-3402 955 bp Feature: gene Location: 4467215-4468009 bp Ori: KMI18466.1 Feature: domain Description: PRK09692 Location: 4467224-4467587 bp Feature: domain Description: PRK09692 Location: 44672 2 4-4467587 bp Feature: domain Description: PRK09692 Location: 4467605-4467980 bp Feature: domain Description: PRK09692 Location: 4467605-4467980 bp Feature: gene Location: 4468241-4468882 bp Ori: KMI18467.1 Feature: domain Description: SLATT_5 Location: 4468244-4468847 bp Feature: domain Description: SLATT_5 Location: 44682 44-4468847 bp Feature: gene Location: 4469077-4470486 bp Ori: KMI18468.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4469314-4469926 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4469314-446992 6 bp Feature: gene Location: 4471183-4471362 bp Ori: KMI18469.1 Feature: domain Description: Psu Location: 4471201-4471360 bp Feature: domain Description: Psu Location: 44712 01-4471360 bp Feature: gene Location: 4471724-4472191 bp Ori: KMI18470.1 Feature: domain Description: PRK00872 Location: 4471730-4472186 bp Feature: domain Description: PRK00872 Location: 4471730-4472 186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK00872 (hypothetical protein; Provisional)