myRT

myRT report for GCA_001034065.1_Kleb_pneu_BIDMC90_V1

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Seq: KQ089643.1 Klebsiella pneumoniae strain BIDMC90 genomic scaffold aeurL-supercont1.3, whole genome shotgun sequence (1384665 bp)
Overview 1 RT 1: 1370737-1376563 bp Neighborhood of RT #1 [1370737, 1376628] PRK15091 FocA RVT-GII NolL Acyl_transf_3 Feature: gene Location: 1370737-1371498 bp Feature: domain Description: PRK15091 Location: 1370740-1371496 bp Feature: domain Description: PRK1 5091 Location: 1 370740-1 371 496 bp Feature: gene Location: 1371788-1372717 bp Feature: domain Description: FocA Location: 1371881-1372658 bp Feature: domain Description: FocA Location: 1 371 881 -1 372658 bp Feature: gene Location: 1373406-1374890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373808-1374498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 373808-1 374498 bp Feature: gene Location: 1375628-1376137 bp Feature: domain Description: NolL Location: 1375631-1376093 bp Feature: domain Description: NolL Location: 1 375631 -1 376093 bp Feature: gene Location: 1376371-1376628 bp Feature: domain Description: Acyl_transf_3 Location: 1376413-1376563 bp Feature: domain Description: Acyl_transf_3 Location: 1 37641 3-1 376563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15091 (phospholipid-binding lipoprotein MlaA), FocA (COG2116), RVT-GII, NolL (COG3594), Acyl_transf_3 (pfam01757)

Seq: KQ089647.1 Klebsiella pneumoniae strain BIDMC90 genomic scaffold aeurL-supercont1.7, whole genome shotgun sequence (64175 bp)
Overview 1 RT 1: 58546-63899 bp Neighborhood of RT #1 [58546, 64036] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 58546-59817 bp Feature: domain Description: umuC Location: 58549-59809 bp Feature: domain Description: umuC Location: 58549-59809 bp Feature: gene Location: 59817-60248 bp Feature: domain Description: PRK10276 Location: 59868-60231 bp Feature: domain Description: PRK102 76 Location: 59868-602 31 bp Feature: gene Location: 60658-62142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61060-61750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61060-61750 bp Feature: gene Location: 62391-63362 bp Feature: domain Description: StbA Location: 62394-63339 bp Feature: domain Description: StbA Location: 62 394-63339 bp Feature: gene Location: 63365-64036 bp Feature: domain Description: Plasmid_stab_B Location: 63380-63587 bp Feature: domain Description: Plasmid_stab_B Location: 63380-63587 bp Feature: domain Description: Plasmid_stab_B Location: 63692-63899 bp Feature: domain Description: Plasmid_stab_B Location: 63692 -63899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: KQ089641.1 Klebsiella pneumoniae strain BIDMC90 genomic scaffold aeurL-supercont1.1, whole genome shotgun sequence (2799861 bp)
Overview 1 RT 1: 1187014-1191479 bp 2 RT 2: 1994397-2000618 bp 3 RT 3: 2044770-2050153 bp 4 RT 4: 2498862-2504241 bp 5 RT 5: 2526837-2534893 bp Neighborhood of RT #1 [1187014, 1191553] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1994397, 2000620] AAA_21 AAA_21 McrA RVT-GII PRK10276 umuC Neighborhood of RT #3 [2044770, 2050248] umuC PRK10276 RVT-GII GATase1_ScBLP_like BPL_N AcrR Neighborhood of RT #4 [2498862, 2504249] RVT-GII PRK10597 DUF1367 Neighborhood of RT #5 [2526837, 2535012] Phage-tail_3 RVT-GII PinE SGNH_hydrolase_peri1 Feature: gene Location: 1187014-1187691 bp Feature: gene Location: 1187807-1189027 bp Feature: domain Description: zf-ISL3 Location: 1187939-1188065 bp Feature: domain Description: zf-ISL3 Location: 118793 9-1188065 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1188083-1188230 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1188083 -118823 0 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1188281-1188986 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1188281-1188986 bp Feature: gene Location: 1189435-1190919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189837-1190527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118983 7-1190527 bp Feature: gene Location: 1190997-1191236 bp Feature: gene Location: 1191236-1191553 bp Feature: domain Description: PRK10276 Location: 1191242-1191356 bp Feature: domain Description: PRK10276 Location: 1191242-11913 56 bp Feature: domain Description: PRK10276 Location: 1191383-1191479 bp Feature: domain Description: PRK10276 Location: 11913 83 -1191479 bp Feature: gene Location: 1994397-1995920 bp Feature: domain Description: AAA_21 Location: 1994487-1994589 bp Feature: domain Description: AAA_21 Location: 1994487-1994589 bp Feature: domain Description: AAA_21 Location: 1995021-1995540 bp Feature: domain Description: AAA_21 Location: 1995021-1995540 bp Feature: gene Location: 1995913-1996587 bp Feature: domain Description: McrA Location: 1996030-1996225 bp Feature: domain Description: McrA Location: 199603 0-1996225 bp Feature: gene Location: 1997370-1998854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1997772-1998462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1997772-1998462 bp Feature: gene Location: 1998847-1999353 bp Feature: domain Description: PRK10276 Location: 1998937-1999348 bp Feature: domain Description: PRK10276 Location: 199893 7-19993 48 bp Feature: gene Location: 1999310-2000620 bp Feature: domain Description: umuC Location: 1999358-2000618 bp Feature: domain Description: umuC Location: 19993 58-2000618 bp Feature: gene Location: 2044770-2046032 bp Feature: domain Description: umuC Location: 2044773-2046030 bp Feature: domain Description: umuC Location: 2044773 -204603 0 bp Feature: gene Location: 2046035-2046454 bp Feature: domain Description: PRK10276 Location: 2046038-2046449 bp Feature: domain Description: PRK10276 Location: 204603 8-2046449 bp Feature: gene Location: 2046530-2048014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046932-2047622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204693 2-2047622 bp Feature: gene Location: 2048858-2049634 bp Feature: domain Description: GATase1_ScBLP_like Location: 2048978-2049419 bp Feature: domain Description: GATase1_ScBLP_like Location: 2048978-2049419 bp Feature: domain Description: BPL_N Location: 2049470-2049575 bp Feature: domain Description: BPL_N Location: 2049470-2049575 bp Feature: gene Location: 2049661-2050248 bp Feature: domain Description: AcrR Location: 2049688-2050153 bp Feature: domain Description: AcrR Location: 2049688-2050153 bp Feature: gene Location: 2498862-2499296 bp Feature: gene Location: 2499296-2499961 bp Feature: gene Location: 2501330-2502678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2501732-2502422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250173 2-2502422 bp Feature: gene Location: 2503030-2503263 bp Feature: domain Description: PRK10597 Location: 2503033-2503258 bp Feature: domain Description: PRK10597 Location: 2503 03 3 -2503 258 bp Feature: gene Location: 2503653-2504249 bp Feature: domain Description: DUF1367 Location: 2503656-2504241 bp Feature: domain Description: DUF13 67 Location: 2503 656-2504241 bp Feature: gene Location: 2526837-2527217 bp Feature: gene Location: 2527214-2530282 bp Feature: domain Description: Phage-tail_3 Location: 2529617-2529884 bp Feature: domain Description: Phage-tail_3 Location: 2529617-2529884 bp Feature: gene Location: 2530476-2531190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2530878-2531190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 0878-253 1190 bp Feature: gene Location: 2532558-2533136 bp Feature: domain Description: PinE Location: 2532561-2533107 bp Feature: domain Description: PinE Location: 253 2561-253 3 107 bp Feature: gene Location: 2533228-2535012 bp Feature: domain Description: SGNH_hydrolase_peri1 Location: 2534020-2534893 bp Feature: domain Description: SGNH_hydrolase_peri1 Location: 253 4020-253 4893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), AAA_21 (pfam13304), McrA (COG4058), umuC (PRK03609), GATase1_ScBLP_like (cd03144), BPL_N (pfam09825)
AcrR (COG1309), PRK10597 (DNA damage-inducible protein I; Provisional), DUF1367 (pfam07105), Phage-tail_3 (pfam13550), PinE (COG1961), SGNH_hydrolase_peri1 (cd01825)

Seq: KQ089642.1 Klebsiella pneumoniae strain BIDMC90 genomic scaffold aeurL-supercont1.2, whole genome shotgun sequence (1523481 bp)
Overview 1 RT 1: 505106-513991 bp 2 RT 2: 583131-587681 bp Neighborhood of RT #1 [505106, 514752] PRK13578 YqgA RVT-GII DUF1837 BRR2 Neighborhood of RT #2 [583131, 587713] DHPS-like_MBL-fold RVT-GII hdeB Feature: gene Location: 505106-507244 bp Feature: domain Description: PRK13578 Location: 505109-507239 bp Feature: domain Description: PRK13578 Location: 505109-507239 bp Feature: gene Location: 507664-508377 bp Feature: domain Description: YqgA Location: 507670-508372 bp Feature: domain Description: YqgA Location: 507670-508372 bp Feature: gene Location: 509339-510823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509741-510428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50974 1-5104 28 bp Feature: gene Location: 511265-512158 bp Feature: domain Description: DUF1837 Location: 511397-512102 bp Feature: domain Description: DUF1837 Location: 511397-512102 bp Feature: gene Location: 512164-514752 bp Feature: domain Description: BRR2 Location: 512560-513991 bp Feature: domain Description: BRR2 Location: 512560-513991 bp Feature: gene Location: 583131-583364 bp Feature: gene Location: 584114-584959 bp Feature: domain Description: DHPS-like_MBL-fold Location: 584123-584936 bp Feature: domain Description: DHPS-like_MBL-fold Location: 584 123-584 936 bp Feature: gene Location: 585533-587017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585935-586622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585935-586622 bp Feature: gene Location: 587010-587411 bp Feature: gene Location: 587480-587713 bp Feature: domain Description: hdeB Location: 587486-587681 bp Feature: domain Description: hdeB Location: 5874 86-587681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13578 (ornithine decarboxylase; Provisional), YqgA (COG1811), RVT-GII, DUF1837 (pfam08878), BRR2 (COG1204), DHPS-like_MBL-fold (cd07713), hdeB (PRK11566)

Seq: KQ089644.1 Klebsiella pneumoniae strain BIDMC90 genomic scaffold aeurL-supercont1.4, whole genome shotgun sequence (313908 bp)
Overview 1 RT 1: 142799-148056 bp 2 RT 2: 174291-178845 bp 3 RT 3: 298237-302654 bp Neighborhood of RT #1 [142799, 148056] umuC PRK10276 RVT-GII cas7_csf2 Neighborhood of RT #2 [174291, 178871] GntR IS5 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [298237, 302654] INT_Cre_C RVT-GII HHA Feature: gene Location: 142799-142921 bp Feature: domain Description: umuC Location: 142802-142901 bp Feature: domain Description: umuC Location: 142802-142901 bp Feature: gene Location: 142921-143343 bp Feature: domain Description: PRK10276 Location: 142927-143329 bp Feature: domain Description: PRK10276 Location: 142927-143329 bp Feature: gene Location: 143428-144912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143830-144520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143830-1445 20 bp Feature: gene Location: 146313-147344 bp Feature: domain Description: cas7_csf2 Location: 146361-147279 bp Feature: domain Description: cas7_csf2 Location: 146361-147279 bp Feature: gene Location: 147349-148056 bp Feature: gene Location: 174291-174953 bp Feature: domain Description: GntR Location: 174297-174909 bp Feature: domain Description: GntR Location: 174297-174909 bp Feature: gene Location: 175118-175387 bp Feature: domain Description: IS5 Location: 175130-175382 bp Feature: domain Description: IS5 Location: 175 130-175 382 bp Feature: gene Location: 176005-177525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176278-177007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176278-177007 bp Feature: domain Description: GIIM Note: maturase Location: 177079-177280 bp Feature: domain Description: GIIM Note: maturase Location: 177079-177280 bp Feature: gene Location: 178168-178440 bp Feature: domain Description: PHA02517 Location: 178174-178423 bp Feature: domain Description: PHA025 17 Location: 178174-178423 bp Feature: gene Location: 178566-178871 bp Feature: domain Description: InsE Location: 178575-178845 bp Feature: domain Description: InsE Location: 1785 75 -178845 bp Feature: gene Location: 298237-299373 bp Feature: domain Description: INT_Cre_C Location: 298660-299314 bp Feature: domain Description: INT_Cre_C Location: 298660-299314 bp Feature: gene Location: 299383-299583 bp Feature: gene Location: 299580-300944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299982-300516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299982-3005 16 bp Feature: gene Location: 301460-301714 bp Feature: domain Description: HHA Location: 301511-301694 bp Feature: domain Description: HHA Location: 3015 11-301694 bp Feature: gene Location: 301800-302654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, cas7_csf2 (TIGR03115), GntR (pfam00392), IS5 (COG3039), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), INT_Cre_C (cd00799)
HHA (pfam05321)

Seq: KQ089646.1 Klebsiella pneumoniae strain BIDMC90 genomic scaffold aeurL-supercont1.6, whole genome shotgun sequence (104681 bp)
Overview 1 RT 1: 61102-65885 bp Neighborhood of RT #1 [61102, 65885] YafO_toxin Microcin RVT-GII INT_P4_C Feature: gene Location: 61102-61512 bp Feature: domain Description: YafO_toxin Location: 61210-61495 bp Feature: domain Description: YafO_toxin Location: 6 1210-6 1495 bp Feature: gene Location: 61576-61935 bp Feature: domain Description: Microcin Location: 61723-61822 bp Feature: domain Description: Microcin Location: 6 1723-6 1822 bp Feature: gene Location: 62839-64323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63241-63931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 3241-6 3931 bp Feature: gene Location: 64491-65510 bp Feature: domain Description: INT_P4_C Location: 64869-65415 bp Feature: domain Description: INT_P4_C Location: 6 486 9-6 5415 bp Feature: gene Location: 65505-65885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafO_toxin (pfam13957), Microcin (pfam03526), RVT-GII, INT_P4_C (cd00801)