myRT

myRT report for GCA_001034085.1_Kleb_pneu_BIDMC91_V1

Download annotations/find similar RTs

Seq: KQ089654.1 Klebsiella pneumoniae strain BIDMC91 genomic scaffold aeurt-supercont1.2, whole genome shotgun sequence (181379 bp)
Overview 1 RT 1: 81376-86561 bp Neighborhood of RT #1 [81376, 86572] DDE_Tnp_1_5 PHA02517 RVT-GII GIIM InsE fn3_3 Feature: gene Location: 81376-82344 bp Ori: KMI23693.1 Feature: domain Description: DDE_Tnp_1_5 Location: 81478-81811 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 81 478-81 81 1 bp Feature: gene Location: 82470-82862 bp Ori: KMI23694.1 Feature: domain Description: PHA02517 Location: 82476-82854 bp Feature: domain Description: PHA0251 7 Location: 82476-82854 bp Feature: gene Location: 83027-84550 bp Ori: KMI23695.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83300-84032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83300-84032 bp Feature: domain Description: GIIM Note: maturase Location: 84107-84305 bp Feature: domain Description: GIIM Note: maturase Location: 841 07-84305 bp Feature: gene Location: 85609-85887 bp Ori: KMI23696.1 Feature: domain Description: InsE Location: 85621-85879 bp Feature: domain Description: InsE Location: 85621 -85879 bp Feature: gene Location: 86075-86572 bp Ori: KMI23697.1 Feature: domain Description: fn3_3 Location: 86348-86561 bp Feature: domain Description: fn3_3 Location: 86348-86561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), fn3_3 (pfam14686)

Seq: KQ089653.1 Klebsiella pneumoniae strain BIDMC91 genomic scaffold aeurt-supercont1.1, whole genome shotgun sequence (5262037 bp)
Overview 1 RT 1: 1349251-1354668 bp 2 RT 2: 2472734-2477654 bp 3 RT 3: 3716160-3721814 bp 4 RT 4: 4401407-4406377 bp Neighborhood of RT #1 [1349251, 1354670] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [2472734, 2478091] PRK10276 RVT-GII SASA Neighborhood of RT #3 [3716160, 3721837] umuC PHA02517 RVT-GII GIIM InsE DUF2946 Neighborhood of RT #4 [4401407, 4406382] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu PRK00872 Feature: gene Location: 1349251-1350390 bp Ori: KMI31457.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1349434-1350334 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1349434-1350334 bp Feature: gene Location: 1350561-1350803 bp Ori: KMI31458.1 Feature: domain Description: DinI Location: 1350612-1350792 bp Feature: domain Description: DinI Location: 1350612 -1350792 bp Feature: gene Location: 1351420-1352904 bp Ori: KMI31459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351822-1352512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135182 2 -1352 512 bp Feature: gene Location: 1352983-1353402 bp Ori: KMI31460.1 Feature: domain Description: PRK10276 Location: 1352986-1353397 bp Feature: domain Description: PRK102 76 Location: 1352 986-1353397 bp Feature: gene Location: 1353405-1354670 bp Ori: KMI31461.1 Feature: domain Description: umuC Location: 1353408-1354668 bp Feature: domain Description: umuC Location: 1353408-1354668 bp Feature: gene Location: 2472734-2473051 bp Ori: KMI28975.1 Feature: domain Description: PRK10276 Location: 2472740-2472854 bp Feature: domain Description: PRK102 76 Location: 2 472 740-2 472 854 bp Feature: gene Location: 2473051-2473290 bp Feature: gene Location: 2473369-2474853 bp Ori: KMI28977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2473771-2474461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 473771-2 474461 bp Feature: gene Location: 2475305-2476105 bp Feature: gene Location: 2476115-2478091 bp Ori: KMI28979.1 Feature: domain Description: SASA Location: 2476910-2477654 bp Feature: domain Description: SASA Location: 2 476910-2 477654 bp Feature: gene Location: 3716160-3717431 bp Ori: KMI26026.1 Feature: domain Description: umuC Location: 3716163-3717429 bp Feature: domain Description: umuC Location: 3716163-371742 9 bp Feature: gene Location: 3717537-3717941 bp Ori: KMI26027.1 Feature: domain Description: PHA02517 Location: 3717540-3717921 bp Feature: domain Description: PHA02 517 Location: 3717540-371792 1 bp Feature: gene Location: 3718106-3719629 bp Ori: KMI26028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3718379-3719111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3718379-3719111 bp Feature: domain Description: GIIM Note: maturase Location: 3719186-3719384 bp Feature: domain Description: GIIM Note: maturase Location: 3719186-3719384 bp Feature: gene Location: 3720673-3720975 bp Ori: KMI26029.1 Feature: domain Description: InsE Location: 3720682-3720964 bp Feature: domain Description: InsE Location: 372 0682 -372 0964 bp Feature: gene Location: 3721562-3721837 bp Ori: KMI26030.1 Feature: domain Description: DUF2946 Location: 3721601-3721814 bp Feature: domain Description: DUF2 946 Location: 372 1601-372 1814 bp Feature: gene Location: 4401407-4402201 bp Ori: KMI26680.1 Feature: domain Description: PRK09692 Location: 4401416-4401779 bp Feature: domain Description: PRK09692 Location: 4401416-4401779 bp Feature: domain Description: PRK09692 Location: 4401797-4402172 bp Feature: domain Description: PRK09692 Location: 4401797-4402 172 bp Feature: gene Location: 4402433-4403074 bp Ori: KMI26681.1 Feature: domain Description: SLATT_5 Location: 4402436-4403039 bp Feature: domain Description: SLATT_5 Location: 4402 436-4403039 bp Feature: gene Location: 4403269-4404120 bp Ori: KMI26682.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4403290-4403560 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 44032 90-4403560 bp Feature: gene Location: 4405374-4405553 bp Ori: KMI26683.1 Feature: domain Description: Psu Location: 4405392-4405551 bp Feature: domain Description: Psu Location: 4405392 -4405551 bp Feature: gene Location: 4405915-4406382 bp Ori: KMI26684.1 Feature: domain Description: PRK00872 Location: 4405921-4406377 bp Feature: domain Description: PRK00872 Location: 440592 1-4406377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), SASA (pfam03629), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), InsE (COG2963), DUF2946 (pfam11162)
PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK00872 (hypothetical protein; Provisional)

Seq: KQ089655.1 Klebsiella pneumoniae strain BIDMC91 genomic scaffold aeurt-supercont1.3, whole genome shotgun sequence (146786 bp)
Overview 1 RT 1: 27939-33292 bp Neighborhood of RT #1 [27939, 33429] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 27939-29210 bp Ori: KMI23490.1 Feature: domain Description: umuC Location: 27942-29202 bp Feature: domain Description: umuC Location: 27942-29202 bp Feature: gene Location: 29210-29641 bp Ori: KMI23491.1 Feature: domain Description: PRK10276 Location: 29261-29624 bp Feature: domain Description: PRK10276 Location: 29261-29624 bp Feature: gene Location: 30051-31535 bp Ori: KMI23492.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30453-31143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0453 -3 1143 bp Feature: gene Location: 31784-32755 bp Ori: KMI23493.1 Feature: domain Description: StbA Location: 31787-32732 bp Feature: domain Description: StbA Location: 3 1787-3 273 2 bp Feature: gene Location: 32758-33429 bp Ori: KMI23494.1 Feature: domain Description: Plasmid_stab_B Location: 32773-32980 bp Feature: domain Description: Plasmid_stab_B Location: 3 2773 -3 2980 bp Feature: domain Description: Plasmid_stab_B Location: 33085-33292 bp Feature: domain Description: Plasmid_stab_B Location: 3 3 085-3 3 292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)