myRT

myRT report for GCA_001038035.1_ASM103803v1

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Seq: LFGN01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain smonpas004260-17 contig0001, whole genome shotgun sequence (502496 bp)
Overview 1 RT 1: 219291-224901 bp Neighborhood of RT #1 [219291, 224906] RVT-UG11 PRK05658 DnaG Feature: gene Location: 219291-219476 bp Feature: gene Location: 219908-220210 bp Ori: KMJ71847.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 219911-220022 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 21 991 1 -220022 bp Feature: gene Location: 221164-223011 bp Ori: KMJ72096.1 Feature: domain Description: PRK05658 Location: 221170-223009 bp Feature: domain Description: PRK05658 Location: 221 1 70-223009 bp Feature: gene Location: 223161-224906 bp Ori: KMJ71848.1 Gene: dnaG Feature: domain Description: DnaG Location: 223173-224901 bp Feature: domain Description: DnaG Location: 2231 73-224901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, PRK05658 (RNA polymerase sigma factor RpoD; Validated), DnaG (COG0358)

Seq: LFGN01000016.1 Salmonella enterica subsp. enterica serovar Typhimurium strain smonpas004260-17 contig0016, whole genome shotgun sequence (628218 bp)
Overview 1 RT 1: 141096-147435 bp Neighborhood of RT #1 [141096, 147458] PRK10216 PRK10473 RVT-Retrons INT_P4_C PRK09692 Feature: gene Location: 141096-142055 bp Ori: KMJ61675.1 Feature: domain Description: PRK10216 Location: 141099-142050 bp Feature: domain Description: PRK102 16 Location: 141099-142 050 bp Feature: gene Location: 142024-143211 bp Ori: KMJ61676.1 Feature: domain Description: PRK10473 Location: 142027-143203 bp Feature: domain Description: PRK10473 Location: 142 02 7-1432 03 bp Feature: gene Location: 144013-144948 bp Ori: KMJ61677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 144124-144709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14412 4-144709 bp Feature: gene Location: 146238-146948 bp Ori: KMJ62088.1 Feature: domain Description: INT_P4_C Location: 146346-146877 bp Feature: domain Description: INT_P4_C Location: 146346-146877 bp Feature: gene Location: 146964-147458 bp Ori: KMJ61678.1 Feature: domain Description: PRK09692 Location: 146973-147435 bp Feature: domain Description: PRK09692 Location: 146973-147435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, INT_P4_C (cd00801), PRK09692 (Integrase; provisional)