myRT

myRT report for GCA_001038185.1_ASM103818v1

Download annotations/find similar RTs

Seq: JGCL01000021.1 Bradyrhizobium japonicum strain FN1 contig2526187989, whole genome shotgun sequence (218882 bp)
Overview 1 RT 1: 63031-67943 bp Neighborhood of RT #1 [63031, 68065] RVT-GII GIIM Tra5 Feature: gene Location: 63031-63330 bp Feature: gene Location: 63825-64031 bp Feature: gene Location: 65540-66784 bp Ori: KMJ94748.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65741-66398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65741 -66398 bp Feature: domain Description: GIIM Note: maturase Location: 66476-66704 bp Feature: domain Description: GIIM Note: maturase Location: 66476-66704 bp Feature: gene Location: 67193-68065 bp Ori: KMJ94749.1 Feature: domain Description: Tra5 Location: 67235-67943 bp Feature: domain Description: Tra5 Location: 67235-67943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: JGCL01000055.1 Bradyrhizobium japonicum strain FN1 contig2526188023, whole genome shotgun sequence (9879 bp)
Overview 1 RT 1: 22-8594 bp Neighborhood of RT #1 [22, 8594] HTH_32 PRK06847 RVT-GII RVT-GII RVT-GII Feature: gene Location: 22-387 bp Ori: KMJ93308.1 Feature: domain Description: HTH_32 Location: 127-349 bp Feature: domain Description: HTH_32 Location: 12 7-349 bp Feature: gene Location: 1365-2498 bp Ori: KMJ93309.1 Feature: domain Description: PRK06847 Location: 1368-2493 bp Feature: domain Description: PRK06847 Location: 1368-2 493 bp Feature: gene Location: 3971-4531 bp Ori: KMJ93310.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4379-4457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4379-4457 bp Feature: gene Location: 4536-4730 bp Ori: KMJ93311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4566-4719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4566-4719 bp Feature: gene Location: 4763-5449 bp Ori: KMJ93312.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4766-5072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4766-5072 bp Feature: gene Location: 7432-7833 bp Feature: gene Location: 8052-8594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), PRK06847 (hypothetical protein; Provisional), RVT-GII

Seq: JGCL01000042.1 Bradyrhizobium japonicum strain FN1 contig2526188010, whole genome shotgun sequence (23915 bp)
Overview 1 RT 1: 16519-21232 bp Neighborhood of RT #1 [16519, 21294] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Feature: gene Location: 16519-16752 bp Feature: gene Location: 17664-17933 bp Ori: KMJ93531.1 Feature: domain Description: DDE_Tnp_IS66 Location: 17670-17916 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17670-17916 bp Feature: gene Location: 18082-19413 bp Ori: KMJ93532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18376-19039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 76-1903 9 bp Feature: domain Description: GIIM Note: maturase Location: 19105-19327 bp Feature: domain Description: GIIM Note: maturase Location: 19105-193 27 bp Feature: gene Location: 19346-20182 bp Ori: KMJ93533.1 Feature: domain Description: LomR Location: 19382-20093 bp Feature: domain Description: LomR Location: 193 82-20093 bp Feature: gene Location: 20626-21294 bp Ori: KMJ93534.1 Feature: domain Description: PHA02518 Location: 20635-21232 bp Feature: domain Description: PHA02518 Location: 2063 5-2123 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)

Seq: JGCL01000036.1 Bradyrhizobium japonicum strain FN1 contig2526188004, whole genome shotgun sequence (37529 bp)
Overview 1 RT 1: 31168-35699 bp Neighborhood of RT #1 [31168, 36064] RVT-GII Feature: gene Location: 31168-31425 bp Feature: gene Location: 32047-34362 bp Feature: gene Location: 34655-36064 bp Ori: KMJ93691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35009-35699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35009-35699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII