myRT

myRT report for GCA_001038305.1_ASM103830v1

Download annotations/find similar RTs

Seq: LDZM01000004.1 Klebsiella michiganensis strain GY84G39 contig_4, whole genome shotgun sequence (388003 bp)
Overview 1 RT 1: 77380-84723 bp Neighborhood of RT #1 [77380, 84728] TrxB AcrR RVT-UG15 proA proB Feature: gene Location: 77380-78273 bp Ori: KMK44446.1 Feature: domain Description: TrxB Location: 77386-78262 bp Feature: domain Description: TrxB Location: 77386-78262 bp Feature: gene Location: 78393-79052 bp Ori: KMK44447.1 Feature: domain Description: AcrR Location: 78432-79017 bp Feature: domain Description: AcrR Location: 78432-7901 7 bp Feature: gene Location: 79672-81288 bp Ori: KMK44448.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 80083-80503 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 80083-80503 bp Feature: gene Location: 82361-83614 bp Ori: KMK44449.1 Feature: domain Description: proA Location: 82388-83579 bp Feature: domain Description: proA Location: 82388-83579 bp Feature: gene Location: 83625-84728 bp Ori: KMK44450.1 Feature: domain Description: proB Location: 83640-84723 bp Feature: domain Description: proB Location: 83640-84723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrxB (COG0492), AcrR (COG1309), RVT-UG15, proA (TIGR00407), proB (TIGR01027)

Seq: LDZM01000001.1 Klebsiella michiganensis strain GY84G39 contig_1, whole genome shotgun sequence (817693 bp)
Overview 1 RT 1: 230694-237203 bp Neighborhood of RT #1 [230694, 237331] HTH_36 AAA_21 RVT-Retrons INT_Rci_Hp1_C INT_P4_C Feature: gene Location: 230694-231227 bp Ori: KMK46572.1 Feature: domain Description: HTH_36 Location: 230880-231036 bp Feature: domain Description: HTH_36 Location: 2 30880-2 31036 bp Feature: gene Location: 231687-233804 bp Ori: KMK46573.1 Feature: domain Description: AAA_21 Location: 231762-232671 bp Feature: domain Description: AAA_2 1 Location: 2 31762 -2 32 671 bp Feature: gene Location: 233971-235074 bp Ori: KMK46574.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 234121-234670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3412 1-2 34670 bp Feature: gene Location: 235284-235862 bp Feature: gene Location: 235874-237331 bp Ori: KMK46576.1 Feature: domain Description: INT_Rci_Hp1_C Location: 236252-236453 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 362 52 -2 36453 bp Feature: domain Description: INT_P4_C Location: 236678-237203 bp Feature: domain Description: INT_P4_C Location: 2 36678-2 372 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), AAA_21 (pfam13304), RVT-Retrons, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801)

Seq: LDZM01000038.1 Klebsiella michiganensis strain GY84G39 contig_38, whole genome shotgun sequence (11589 bp)
Overview 1 RT 1: 5834-10773 bp Neighborhood of RT #1 [5834, 10883] glmM Zn_Tnp_IS91 Y2_Tnp RVT-GII SR_Res_par HTH_7 Feature: gene Location: 5834-6136 bp Ori: KMK35031.1 Feature: domain Description: glmM Location: 5837-6077 bp Feature: domain Description: glmM Location: 583 7-6077 bp Feature: gene Location: 6312-7805 bp Ori: KMK35032.1 Feature: domain Description: Zn_Tnp_IS91 Location: 6414-6690 bp Feature: domain Description: Zn_Tnp_IS91 Location: 6414-6690 bp Feature: domain Description: Y2_Tnp Location: 6825-7491 bp Feature: domain Description: Y2_Tnp Location: 6825-7491 bp Feature: gene Location: 7882-9366 bp Ori: KMK35033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8284-8974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8284-8974 bp Feature: gene Location: 9925-10149 bp Feature: gene Location: 10146-10883 bp Ori: KMK35035.1 Feature: domain Description: SR_Res_par Location: 10188-10614 bp Feature: domain Description: SR_Res_par Location: 10188-10614 bp Feature: domain Description: HTH_7 Location: 10665-10773 bp Feature: domain Description: HTH_7 Location: 10665-10773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glmM (TIGR01455), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-GII, SR_Res_par (cd03767), HTH_7 (pfam02796)