myRT

myRT report for GCA_001038385.1_ASM103838v1

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Seq: LDZL01000025.1 Pluralibacter gergoviae strain SF84F43 contig_25, whole genome shotgun sequence (62428 bp)
Overview 1 RT 1: 4641-9988 bp Neighborhood of RT #1 [4641, 9990] StbD PRK10276 RVT-GII Antirestrict Feature: gene Location: 4641-4892 bp Feature: domain Description: StbD Location: 4659-4827 bp Feature: domain Description: StbD Location: 4659-4827 bp Feature: gene Location: 6243-6668 bp Feature: domain Description: PRK10276 Location: 6246-6654 bp Feature: domain Description: PRK1 0276 Location: 6246-6654 bp Feature: gene Location: 7073-8581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475-8189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475-81 89 bp Feature: gene Location: 8815-9045 bp Feature: gene Location: 9565-9990 bp Feature: domain Description: Antirestrict Location: 9700-9988 bp Feature: domain Description: Antirestrict Location: 9700-9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbD (COG2161), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: LDZL01000027.1 Pluralibacter gergoviae strain SF84F43 contig_27, whole genome shotgun sequence (40954 bp)
Overview 1 RT 1: 2851-9569 bp Neighborhood of RT #1 [2851, 9569] DUF2946 InsE RVT-GII GIIM HTH_23 HTH_33 DDE_3 Feature: gene Location: 2851-3309 bp Feature: domain Description: DUF2946 Location: 2887-3286 bp Feature: domain Description: DUF2 946 Location: 2 887-32 86 bp Feature: gene Location: 4213-4497 bp Feature: domain Description: InsE Location: 4225-4486 bp Feature: domain Description: InsE Location: 42 2 5-4486 bp Feature: gene Location: 5571-7079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5829-6561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582 9-6561 bp Feature: domain Description: GIIM Note: maturase Location: 6636-6834 bp Feature: domain Description: GIIM Note: maturase Location: 6636-6834 bp Feature: gene Location: 8430-9362 bp Feature: domain Description: HTH_23 Location: 8436-8550 bp Feature: domain Description: HTH_2 3 Location: 8436-8550 bp Feature: domain Description: HTH_33 Location: 8655-8802 bp Feature: domain Description: HTH_33 Location: 8655-8802 bp Feature: domain Description: DDE_3 Location: 8862-9279 bp Feature: domain Description: DDE_3 Location: 8862 -92 79 bp Feature: gene Location: 9348-9569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2946 (pfam11162), InsE (COG2963), RVT-GII, GIIM (pfam08388), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LDZL01000001.1 Pluralibacter gergoviae strain SF84F43 contig_1, whole genome shotgun sequence (1006815 bp)
Overview 1 RT 1: 542089-547108 bp Neighborhood of RT #1 [542089, 547149] TIGR02646 COG3950 RVT-Retrons Tra5 Feature: gene Location: 542089-542757 bp Feature: domain Description: TIGR02646 Location: 542155-542551 bp Feature: domain Description: TIGR02646 Location: 542155-542551 bp Feature: gene Location: 542754-544415 bp Feature: domain Description: COG3950 Location: 542910-544362 bp Feature: domain Description: COG3 950 Location: 542910-5443 62 bp Feature: gene Location: 544412-545347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 544514-545108 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 544514-545108 bp Feature: gene Location: 545746-546021 bp Feature: gene Location: 546355-547149 bp Feature: domain Description: Tra5 Location: 546460-547108 bp Feature: domain Description: Tra5 Location: 546460-547108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Tra5 (COG2801)

Seq: LDZL01000043.1 Pluralibacter gergoviae strain SF84F43 contig_43, whole genome shotgun sequence (2278 bp)
Overview 1 RT 1: 661-1939 bp Neighborhood of RT #1 [661, 2184] RVT-GII GIIM Feature: gene Location: 661-2184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934 -1666 bp Feature: domain Description: GIIM Note: maturase Location: 1741-1939 bp Feature: domain Description: GIIM Note: maturase Location: 174 1-1939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)