myRT

myRT report for GCA_001038565.1_ASM103856v1

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Seq: LFJO01000001.1 Bacillus pseudalcaliphilus strain DSM 8725 super1, whole genome shotgun sequence (554442 bp)
Overview 1 RT 1: 91018-97194 bp Neighborhood of RT #1 [91018, 97208] ImmA RVT-UG2 SRA pfam03781 Feature: gene Location: 91018-91770 bp Ori: KMK77960.1 Feature: domain Description: ImmA Location: 91132-91396 bp Feature: domain Description: ImmA Location: 91 1 32-91 396 bp Feature: gene Location: 91767-92357 bp Feature: gene Location: 92808-94100 bp Ori: KMK78311.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92985-93801 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92985-93801 bp Feature: gene Location: 94200-95060 bp Ori: KMK77962.1 Feature: domain Description: SRA Location: 94623-95040 bp Feature: domain Description: SRA Location: 94623-95040 bp Feature: gene Location: 96495-97208 bp Ori: KMK77963.1 Feature: domain Description: pfam03781 Location: 96606-97194 bp Feature: domain Description: pfam03781 Location: 96606-971 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ImmA (COG2856), RVT-UG2, SRA (smart00466), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: LFJO01000006.1 Bacillus pseudalcaliphilus strain DSM 8725 super11, whole genome shotgun sequence (591712 bp)
Overview 1 RT 1: 492826-496660 bp 2 RT 2: 504108-510692 bp Neighborhood of RT #1 [492826, 496660] GIY-YIG_unchar_2 DUF4357 RVT-Retrons HTH_34 Neighborhood of RT #2 [504108, 510835] InsE PHA02517 RVT-Retrons rumA Scramblase Feature: gene Location: 492826-493758 bp Ori: KMK75264.1 Feature: domain Description: GIY-YIG_unchar_2 Location: 492979-493240 bp Feature: domain Description: GIY-YIG_unchar_2 Location: 492 979-4932 40 bp Feature: domain Description: DUF4357 Location: 493576-493696 bp Feature: domain Description: DUF4357 Location: 493576-493696 bp Feature: gene Location: 494226-495233 bp Ori: KMK75265.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 494439-494991 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 494439-494991 bp Feature: gene Location: 495428-495748 bp Ori: KMK75266.1 Feature: domain Description: HTH_34 Location: 495449-495569 bp Feature: domain Description: HTH_34 Location: 495449-495569 bp Feature: gene Location: 495749-496660 bp Feature: gene Location: 504108-504425 bp Ori: KMK75274.1 Feature: domain Description: InsE Location: 504120-504393 bp Feature: domain Description: InsE Location: 50412 0-504393 bp Feature: gene Location: 504458-505261 bp Ori: KMK75387.1 Feature: domain Description: PHA02517 Location: 504488-505241 bp Feature: domain Description: PHA02 517 Location: 504488-5052 41 bp Feature: gene Location: 505393-507045 bp Ori: KMK75275.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 505522-506110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50552 2 -506110 bp Feature: gene Location: 508877-510253 bp Ori: KMK75276.1 Feature: domain Description: rumA Location: 508940-510224 bp Feature: domain Description: rumA Location: 508940-5102 2 4 bp Feature: gene Location: 510323-510835 bp Ori: KMK75277.1 Feature: domain Description: Scramblase Location: 510503-510692 bp Feature: domain Description: Scramblase Location: 510503-510692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_unchar_2 (cd10447), DUF4357 (pfam14267), RVT-Retrons, HTH_34 (pfam13601), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), rumA (TIGR00479), Scramblase (pfam03803)

Seq: LFJO01000014.1 Bacillus pseudalcaliphilus strain DSM 8725 Contig28, whole genome shotgun sequence (1784 bp)
Overview 1 RT 1: 452-1532 bp Neighborhood of RT #1 [452, 1708] RVT-GII GIIM Feature: gene Location: 452-1708 bp Ori: KMK74442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647-1265 bp Feature: domain Description: GIIM Note: maturase Location: 1316-1532 bp Feature: domain Description: GIIM Note: maturase Location: 13 16-153 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)