myRT

myRT report for GCA_001039555.1_WH8502_v1

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Seq: CAQK01000727.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00240, whole genome shotgun sequence (11756 bp)
Overview 1 RT 1: 4181-9342 bp Neighborhood of RT #1 [4181, 9347] TPR_1 TPR_1 TPR_1 TPR_1 NB-ARC RVT-GII RVT-GII GIIM HNH PRK07369 Feature: gene Location: 4181-5464 bp Ori: CCQ52884.1 Feature: domain Description: TPR_1 Location: 5021-5117 bp Feature: domain Description: TPR_1 Location: 5021 -51 1 7 bp Feature: domain Description: TPR_1 Location: 5120-5216 bp Feature: domain Description: TPR_1 Location: 51 20-521 6 bp Feature: domain Description: TPR_1 Location: 5225-5321 bp Feature: domain Description: TPR_1 Location: 5225-5321 bp Feature: domain Description: TPR_1 Location: 5327-5423 bp Feature: domain Description: TPR_1 Location: 5327-5423 bp Feature: gene Location: 5718-5996 bp Ori: CCQ52885.1 Feature: domain Description: NB-ARC Location: 5721-5940 bp Feature: domain Description: NB-ARC Location: 5721 -5940 bp Feature: gene Location: 6031-6282 bp Ori: CCQ52886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6160-6274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 60-6274 bp Feature: gene Location: 6326-7570 bp Ori: CCQ52887.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6332-6854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6332-6854 bp Feature: domain Description: GIIM Note: maturase Location: 6968-7196 bp Feature: domain Description: GIIM Note: maturase Location: 6968-71 96 bp Feature: domain Description: HNH Note: nucleases Location: 7406-7541 bp Feature: domain Description: HNH Note: nucleases Location: 7406-7541 bp Feature: gene Location: 7817-7972 bp Feature: gene Location: 8088-9347 bp Ori: CCQ52889.1 Feature: domain Description: PRK07369 Location: 8109-9342 bp Feature: domain Description: PRK07369 Location: 81 09-9342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_1 (pfam00515), NB-ARC (pfam00931), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK07369 (dihydroorotase; Provisional)

Seq: CAQK01000310.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00886, whole genome shotgun sequence (1624 bp)
Overview 1 RT 1: 16-1531 bp Neighborhood of RT #1 [16, 1560] RVT_N RVT-GII GIIM HNH Feature: gene Location: 16-1560 bp Ori: CCQ50472.1 Feature: domain Description: RVT_N Location: 19-109 bp Feature: domain Description: RVT_N Location: 19-109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-850 bp Feature: domain Description: GIIM Note: maturase Location: 958-1186 bp Feature: domain Description: GIIM Note: maturase Location: 958-1186 bp Feature: domain Description: HNH Note: nucleases Location: 1396-1531 bp Feature: domain Description: HNH Note: nucleases Location: 1396-1531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CAQK01000027.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00293, whole genome shotgun sequence (1731 bp)
Overview 1 RT 1: 250-1570 bp Neighborhood of RT #1 [250, 1653] RVT-GII GIIM HNH Feature: gene Location: 250-1653 bp Ori: CCQ48862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 -874 bp Feature: domain Description: GIIM Note: maturase Location: 1003-1228 bp Feature: domain Description: GIIM Note: maturase Location: 1003 -1228 bp Feature: domain Description: HNH Note: nucleases Location: 1438-1570 bp Feature: domain Description: HNH Note: nucleases Location: 143 8-1570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CAQK01000424.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00161, whole genome shotgun sequence (2713 bp)
Overview 1 RT 1: 247-2549 bp Neighborhood of RT #1 [247, 2578] RVT_N RVT-GII GIIM HNH Feature: gene Location: 247-435 bp Feature: gene Location: 589-711 bp Feature: gene Location: 824-2578 bp Ori: CCQ51208.1 Feature: domain Description: RVT_N Location: 863-1109 bp Feature: domain Description: RVT_N Location: 863-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163-1847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163-184 7 bp Feature: domain Description: GIIM Note: maturase Location: 1976-2204 bp Feature: domain Description: GIIM Note: maturase Location: 1976-2204 bp Feature: domain Description: HNH Note: nucleases Location: 2414-2549 bp Feature: domain Description: HNH Note: nucleases Location: 24 14 -254 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CAQK01000449.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00180, whole genome shotgun sequence (9882 bp)
Overview 1 RT 1: 3244-6351 bp Neighborhood of RT #1 [3244, 6386] RVT_N RVT-GII GIIM McrA Ppa NdhM Feature: gene Location: 3244-3360 bp Feature: gene Location: 3620-3889 bp Feature: gene Location: 3888-5399 bp Ori: CCQ51313.1 Feature: domain Description: RVT_N Location: 3924-4170 bp Feature: domain Description: RVT_N Location: 3924-4170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4218-4812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4218-4812 bp Feature: domain Description: GIIM Note: maturase Location: 4869-5028 bp Feature: domain Description: GIIM Note: maturase Location: 4869-5 028 bp Feature: domain Description: McrA Location: 5067-5367 bp Feature: domain Description: McrA Location: 5 067-5 367 bp Feature: gene Location: 5492-5902 bp Ori: CCQ51314.1 Feature: domain Description: Ppa Location: 5501-5891 bp Feature: domain Description: Ppa Location: 5 5 01-5 891 bp Feature: gene Location: 6027-6386 bp Ori: CCQ51315.1 Feature: domain Description: NdhM Location: 6036-6351 bp Feature: domain Description: NdhM Location: 6036-635 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Ppa (COG0221), NdhM (pfam10664)

Seq: CAQK01000650.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00189, whole genome shotgun sequence (2046 bp)
Overview 1 RT 1: 690-1470 bp Neighborhood of RT #1 [690, 1475] RVT_N RVT-GII Feature: gene Location: 690-1475 bp Ori: CCQ52383.1 Feature: domain Description: RVT_N Location: 807-1053 bp Feature: domain Description: RVT_N Location: 807-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CAQK01000279.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 01102, whole genome shotgun sequence (6393 bp)
Overview 1 RT 1: 3829-6381 bp Neighborhood of RT #1 [3829, 6381] RVT_N RVT-GII GIIM McrA Feature: gene Location: 3829-4029 bp Feature: gene Location: 4353-4562 bp Ori: CCQ50296.1 Feature: domain Description: RVT_N Location: 4359-4545 bp Feature: domain Description: RVT_N Location: 4359-4545 bp Feature: gene Location: 5142-5876 bp Ori: CCQ50297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5145-5289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5145-5289 bp Feature: domain Description: GIIM Note: maturase Location: 5346-5505 bp Feature: domain Description: GIIM Note: maturase Location: 5346-5505 bp Feature: domain Description: McrA Location: 5565-5844 bp Feature: domain Description: McrA Location: 5565-5844 bp Feature: gene Location: 6010-6381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: CAQK01000011.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00840, whole genome shotgun sequence (33414 bp)
Overview 1 RT 1: 14111-17298 bp Neighborhood of RT #1 [14111, 17298] PRK07428 HNH RVT_N RVT-GII GIIM Feature: gene Location: 14111-14803 bp Ori: CCQ48780.1 Feature: domain Description: PRK07428 Location: 14114-14798 bp Feature: domain Description: PRK07428 Location: 14114-14798 bp Feature: gene Location: 15034-15297 bp Ori: CCQ48781.1 Feature: domain Description: HNH Note: nucleases Location: 15133-15265 bp Feature: domain Description: HNH Note: nucleases Location: 15133-15265 bp Feature: gene Location: 15315-16781 bp Ori: CCQ48782.1 Feature: domain Description: RVT_N Location: 15354-15600 bp Feature: domain Description: RVT_N Location: 15354-15600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15645-16335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15645-16335 bp Feature: domain Description: GIIM Note: maturase Location: 16461-16671 bp Feature: domain Description: GIIM Note: maturase Location: 16461-16671 bp Feature: gene Location: 16945-17136 bp Feature: gene Location: 17140-17298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07428 (carboxylating nicotinate-nucleotide diphosphorylase), HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAQK01000520.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00772, whole genome shotgun sequence (5384 bp)
Overview 1 RT 1: 355-4576 bp Neighborhood of RT #1 [355, 4593] YkfC RVT-GII GIIM NrdF cyano_PEP Feature: gene Location: 355-492 bp Feature: gene Location: 722-853 bp Feature: gene Location: 1070-2557 bp Ori: CCQ51746.1 Feature: domain Description: YkfC Location: 1130-1298 bp Feature: domain Description: YkfC Location: 1130-129 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1346-2000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1346-2000 bp Feature: domain Description: GIIM Note: maturase Location: 2102-2330 bp Feature: domain Description: GIIM Note: maturase Location: 2102-2330 bp Feature: gene Location: 2650-3615 bp Ori: CCQ51747.1 Feature: domain Description: NrdF Location: 2677-3604 bp Feature: domain Description: NrdF Location: 2677-3604 bp Feature: gene Location: 3730-4593 bp Ori: CCQ51748.1 Feature: domain Description: cyano_PEP Location: 4504-4576 bp Feature: domain Description: cyano_PEP Location: 4504-4576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), NrdF (COG0208), cyano_PEP (TIGR04155)

Seq: CAQK01000828.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00811, whole genome shotgun sequence (12880 bp)
Overview 1 RT 1: 4413-8051 bp Neighborhood of RT #1 [4413, 8053] RelE RVT_N RVT-GII GIIM HNH PRK12864 Feature: gene Location: 4413-4649 bp Feature: gene Location: 4660-4995 bp Ori: CCQ53451.1 Feature: domain Description: RelE Location: 4663-4948 bp Feature: domain Description: RelE Location: 4663-4948 bp Feature: gene Location: 6079-7425 bp Ori: CCQ53452.1 Feature: domain Description: RVT_N Location: 6082-6172 bp Feature: domain Description: RVT_N Location: 6082-6172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6220-6910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6220-6910 bp Feature: domain Description: GIIM Note: maturase Location: 7024-7252 bp Feature: domain Description: GIIM Note: maturase Location: 7024-7252 bp Feature: gene Location: 7496-7678 bp Ori: CCQ53453.1 Feature: domain Description: HNH Note: nucleases Location: 7502-7598 bp Feature: domain Description: HNH Note: nucleases Location: 7502-7598 bp Feature: gene Location: 7784-8053 bp Ori: CCQ53454.1 Feature: domain Description: PRK12864 Location: 7787-8051 bp Feature: domain Description: PRK12864 Location: 7787-8051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK12864 (YciI-like protein; Reviewed)

Seq: CAQK01000528.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 01143, whole genome shotgun sequence (1234 bp)
Overview 1 RT 1: 63-1119 bp Neighborhood of RT #1 [63, 1202] RVT-GII GIIM HNH Feature: gene Location: 63-1202 bp Ori: CCQ51796.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-435 bp Feature: domain Description: GIIM Note: maturase Location: 549-777 bp Feature: domain Description: GIIM Note: maturase Location: 549-777 bp Feature: domain Description: HNH Note: nucleases Location: 987-1119 bp Feature: domain Description: HNH Note: nucleases Location: 987-11 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CAQK01000616.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 01026, whole genome shotgun sequence (1268 bp)
Overview 1 RT 1: 150-1089 bp Neighborhood of RT #1 [150, 1190] RVT-GII GIIM Feature: gene Location: 150-1190 bp Ori: CCQ52267.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153-774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153-774 bp Feature: domain Description: GIIM Note: maturase Location: 888-1089 bp Feature: domain Description: GIIM Note: maturase Location: 888-1089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAQK01000202.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00022, whole genome shotgun sequence (1584 bp)
Overview 1 RT 1: 707-1457 bp Neighborhood of RT #1 [707, 1489] RVT-GII GIIM McrA Feature: gene Location: 707-1489 bp Ori: CCQ49914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734-902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734-902 bp Feature: domain Description: GIIM Note: maturase Location: 959-1148 bp Feature: domain Description: GIIM Note: maturase Location: 959-1148 bp Feature: domain Description: McrA Location: 1175-1457 bp Feature: domain Description: McrA Location: 1175-1457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: CAQK01000314.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 01031, whole genome shotgun sequence (29213 bp)
Overview 1 RT 1: 25582-29045 bp Neighborhood of RT #1 [25582, 29047] LC_FACS_like GIIM HNH RVT-GII Feature: gene Location: 25582-27498 bp Ori: CCQ50524.1 Feature: domain Description: LC_FACS_like Location: 25693-27454 bp Feature: domain Description: LC_FACS_like Location: 25693-27454 bp Feature: gene Location: 27602-28246 bp Ori: CCQ50525.1 Feature: domain Description: GIIM Note: maturase Location: 27608-27821 bp Feature: domain Description: GIIM Note: maturase Location: 27608-27821 bp Feature: domain Description: HNH Note: nucleases Location: 28031-28160 bp Feature: domain Description: HNH Note: nucleases Location: 28031-28160 bp Feature: gene Location: 28391-29047 bp Ori: CCQ50526.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28394-29045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28394-29045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LC_FACS_like (cd17640), GIIM (pfam08388), HNH (pfam01844), RVT-GII

Seq: CAQK01000169.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00418, whole genome shotgun sequence (10702 bp)
Overview 1 RT 1: 331-3562 bp Neighborhood of RT #1 [331, 3738] RVT_N RVT-GII GIIM COG5421 COG5421 Feature: gene Location: 331-1884 bp Ori: CCQ49656.1 Feature: domain Description: RVT_N Location: 448-694 bp Feature: domain Description: RVT_N Location: 448-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1432 bp Feature: domain Description: GIIM Note: maturase Location: 1549-1780 bp Feature: domain Description: GIIM Note: maturase Location: 15 49-1780 bp Feature: gene Location: 2113-3213 bp Ori: CCQ49657.1 Feature: domain Description: COG5421 Location: 2494-2863 bp Feature: domain Description: COG5421 Location: 2494-2863 bp Feature: gene Location: 3265-3738 bp Ori: CCQ49658.1 Feature: domain Description: COG5421 Location: 3277-3562 bp Feature: domain Description: COG5421 Location: 3277-3562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5421 (Transposase )

Seq: CAQK01000634.1 Crocosphaera watsonii WH 8502 WGS project CAQK00000000 data, contig 00212, whole genome shotgun sequence (1654 bp)
Overview 1 RT 1: 86-1568 bp Neighborhood of RT #1 [86, 1600] RVT_N RVT-GII GIIM McrA Feature: gene Location: 86-1600 bp Ori: CCQ52334.1 Feature: domain Description: RVT_N Location: 125-371 bp Feature: domain Description: RVT_N Location: 125-371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1013 bp Feature: domain Description: GIIM Note: maturase Location: 1070-1187 bp Feature: domain Description: GIIM Note: maturase Location: 1070-1187 bp Feature: domain Description: McrA Location: 1289-1568 bp Feature: domain Description: McrA Location: 1289-1568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)