myRT

myRT report for GCA_001043065.1_MG839

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Seq: JYLE01000120.1 Pseudomonas helleri strain DSM 28141 120_1778_70.785, whole genome shotgun sequence (1778 bp)
Overview 1 RT 1: 399-1623 bp Neighborhood of RT #1 [399, 1778] RVT-GII GIIM Feature: gene Location: 399-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1 353 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1623 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 0-1 623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JYLE01000022.1 Pseudomonas helleri strain DSM 28141 22_85886_11.0869, whole genome shotgun sequence (85886 bp)
Overview 1 RT 1: 35817-42869 bp Neighborhood of RT #1 [35817, 42871] Arabinose_bd HTH_ARAC DUF2242 RVT-GII GIIM MFS_NIMT_CynX_like AraJ Feature: gene Location: 35817-36857 bp Feature: domain Description: Arabinose_bd Location: 35898-36450 bp Feature: domain Description: Arabinose_bd Location: 35898-36450 bp Feature: domain Description: HTH_ARAC Location: 36591-36834 bp Feature: domain Description: HTH_ARAC Location: 36591-36834 bp Feature: gene Location: 37099-38073 bp Feature: domain Description: DUF2242 Location: 37258-37618 bp Feature: domain Description: DUF2 2 42 Location: 372 58-37618 bp Feature: gene Location: 38259-39680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38616-39231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38616-392 31 bp Feature: domain Description: GIIM Note: maturase Location: 39288-39513 bp Feature: domain Description: GIIM Note: maturase Location: 392 88-39513 bp Feature: gene Location: 41127-42320 bp Feature: domain Description: MFS_NIMT_CynX_like Location: 41187-42303 bp Feature: domain Description: MFS_NIMT_CynX_like Location: 41187-42 303 bp Feature: gene Location: 42662-42871 bp Feature: domain Description: AraJ Location: 42728-42869 bp Feature: domain Description: AraJ Location: 42 72 8-42 869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arabinose_bd (pfam12625), HTH_ARAC (smart00342), DUF2242 (pfam10001), RVT-GII, GIIM (pfam08388), MFS_NIMT_CynX_like (cd17339), AraJ (COG2814)

Seq: JYLE01000117.1 Pseudomonas helleri strain DSM 28141 117_1841_31.4866, whole genome shotgun sequence (1841 bp)
Overview 1 RT 1: 92-1319 bp Neighborhood of RT #1 [92, 1459] RVT-GII GIIM Feature: gene Location: 92-1459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-103 7 bp Feature: domain Description: GIIM Note: maturase Location: 1097-1319 bp Feature: domain Description: GIIM Note: maturase Location: 1097-13 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JYLE01000006.1 Pseudomonas helleri strain DSM 28141 6_163483_12.1185, whole genome shotgun sequence (163483 bp)
Overview 1 RT 1: 158631-162037 bp Neighborhood of RT #1 [158631, 162037] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 158631-159248 bp Feature: domain Description: DUF1566 Location: 158868-159228 bp Feature: domain Description: DUF1566 Location: 158868-159228 bp Feature: gene Location: 159304-159660 bp Feature: domain Description: Avd_like Location: 159331-159640 bp Feature: domain Description: Avd_like Location: 159331-15964 0 bp Feature: gene Location: 159872-161032 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 160124-160883 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 160124 -160883 bp Feature: gene Location: 161070-161315 bp Feature: gene Location: 161312-162037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: JYLE01000021.1 Pseudomonas helleri strain DSM 28141 21_93177_11.2996, whole genome shotgun sequence (93177 bp)
Overview 1 RT 1: 10070-17053 bp Neighborhood of RT #1 [10070, 17505] RocR InsE RVT-GII GIIM DUF4123 VI_Rhs_Vgr Feature: gene Location: 10070-11173 bp Feature: domain Description: RocR Location: 10142-11072 bp Feature: domain Description: RocR Location: 10142-11072 bp Feature: gene Location: 11280-11588 bp Feature: domain Description: InsE Location: 11283-11574 bp Feature: domain Description: InsE Location: 11283-115 74 bp Feature: gene Location: 12631-14154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12904-13636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12904-13636 bp Feature: domain Description: GIIM Note: maturase Location: 13711-13936 bp Feature: domain Description: GIIM Note: maturase Location: 13711-13936 bp Feature: gene Location: 14739-15482 bp Feature: domain Description: DUF4123 Location: 14808-15156 bp Feature: domain Description: DUF4123 Location: 14808-15 15 6 bp Feature: gene Location: 15472-17505 bp Feature: domain Description: VI_Rhs_Vgr Location: 15502-17053 bp Feature: domain Description: VI_Rhs_Vgr Location: 15 5 02-1705 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RocR (COG3829), InsE (COG2963), RVT-GII, GIIM (pfam08388), DUF4123 (pfam13503), VI_Rhs_Vgr (TIGR03361)