myRT

myRT report for GCA_001043975.1_ASM104397v1

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Seq: LABY01000093.1 Methylobacterium variabile strain DSM 16961 contig_93, whole genome shotgun sequence (2216 bp)
Overview 1 RT 1: 165-2090 bp Neighborhood of RT #1 [165, 2182] RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 165-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 -768 bp Feature: domain Description: GIIM Note: maturase Location: 834-1044 bp Feature: domain Description: GIIM Note: maturase Location: 834-1 044 bp Feature: gene Location: 1979-2182 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2009-2090 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2009-2090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: LABY01000112.1 Methylobacterium variabile strain DSM 16961 contig_112, whole genome shotgun sequence (25506 bp)
Overview 1 RT 1: 7595-13648 bp Neighborhood of RT #1 [7595, 16521] Slt70_like COG4922 RVT-Retrons SWIM WGR_DNA_ligase Feature: gene Location: 7595-8635 bp Feature: domain Description: Slt70_like Location: 8000-8174 bp Feature: domain Description: Slt70_like Location: 8000-8174 bp Feature: gene Location: 8854-9309 bp Feature: domain Description: COG4922 Location: 8935-9304 bp Feature: domain Description: COG492 2 Location: 8935-9304 bp Feature: gene Location: 9586-11385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10132-10750 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10132 -10750 bp Feature: gene Location: 11750-13402 bp Feature: domain Description: SWIM Location: 13271-13361 bp Feature: domain Description: SWIM Location: 132 71-13361 bp Feature: gene Location: 13402-16521 bp Feature: domain Description: WGR_DNA_ligase Location: 13420-13648 bp Feature: domain Description: WGR_DNA_ligase Location: 1342 0-13648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), WGR_DNA_ligase (cd07998), Slt70_like, COG4922 (Predicted SnoaL-like aldol condensation-catalyzing enzyme ), RVT-Retrons