myRT

myRT report for GCA_001044555.1_ASM104455v1

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Seq: JZEV01000076.1 Bacillus cereus strain F3162-04 contig1419, whole genome shotgun sequence (152861 bp)
Overview 1 RT 1: 83159-93683 bp 2 RT 2: 138097-143329 bp 3 RT 3: 147831-152392 bp Neighborhood of RT #1 [83159, 93683] UBA_SNF1_fungi RVT-GII HNHc RVT_N RVT-GII GIIM HNH DEXDc Neighborhood of RT #2 [138097, 143329] beta_clamp RVT-GII COG4712 Neighborhood of RT #3 [147831, 152745] rpsA nuc_hydro RVT_N RVT-GII GIIM Feature: gene Location: 83159-83788 bp Feature: domain Description: UBA_SNF1_fungi Location: 83180-83285 bp Feature: domain Description: UBA_SNF1 _fungi Location: 831 80-83285 bp Feature: gene Location: 84124-84822 bp Feature: gene Location: 85714-87600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86026-86764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86026-86764 bp Feature: domain Description: HNHc Note: nucleases Location: 87343-87490 bp Feature: domain Description: HNHc Note: nucleases Location: 87343-87490 bp Feature: gene Location: 88464-90275 bp Feature: RT Description: RVT_N Location: 88518-88764 bp Feature: RT Description: RVT_N Location: 8851 8-88764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88818-89472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8881 8-89472 bp Feature: domain Description: GIIM Note: maturase Location: 89535-89769 bp Feature: domain Description: GIIM Note: maturase Location: 89535-89769 bp Feature: domain Description: HNH Note: nucleases Location: 90009-90144 bp Feature: domain Description: HNH Note: nucleases Location: 90009-901 44 bp Feature: gene Location: 90847-93432 bp Feature: domain Description: DEXDc Location: 91624-92578 bp Feature: domain Description: DEXDc Location: 91 624-92578 bp Feature: gene Location: 93492-93683 bp Feature: gene Location: 138097-139209 bp Feature: domain Description: beta_clamp Location: 138100-139204 bp Feature: domain Description: beta_clamp Location: 1 381 00-1 39204 bp Feature: gene Location: 139290-139817 bp Feature: gene Location: 139895-141793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140210-140912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4021 0-1 4091 2 bp Feature: gene Location: 142555-142911 bp Feature: domain Description: COG4712 Location: 142564-142906 bp Feature: domain Description: COG471 2 Location: 1 42564-1 42906 bp Feature: gene Location: 142952-143329 bp Feature: gene Location: 147831-148814 bp Feature: domain Description: rpsA Location: 148098-148635 bp Feature: domain Description: rpsA Location: 1 48098-1 48635 bp Feature: gene Location: 149429-150379 bp Feature: domain Description: nuc_hydro Location: 149444-150350 bp Feature: domain Description: nuc_hydro Location: 1 49444-1 50350 bp Feature: gene Location: 151099-152745 bp Feature: RT Description: RVT_N Location: 151141-151378 bp Feature: RT Description: RVT_N Location: 1 51 1 41 -1 51 378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151432-152092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 432-1 52092 bp Feature: domain Description: GIIM Note: maturase Location: 152161-152392 bp Feature: domain Description: GIIM Note: maturase Location: 1 521 61 -1 52392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UBA_SNF1_fungi (cd14334), RVT-GII, HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), HNH (pfam01844), DEXDc (smart00487), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), rpsA (TIGR00717)
nuc_hydro (cl00226)

Seq: JZEV01000020.1 Bacillus cereus strain F3162-04 contig1348, whole genome shotgun sequence (208933 bp)
Overview 1 RT 1: 157102-168329 bp Neighborhood of RT #1 [157102, 168329] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc Feature: gene Location: 157102-158172 bp Feature: gene Location: 158447-164812 bp Feature: domain Description: B_ant_repeat Location: 158456-158591 bp Feature: domain Description: B_ant_repeat Location: 158456-158591 bp Feature: domain Description: B_ant_repeat Location: 158831-158984 bp Feature: domain Description: B_ant_repeat Location: 158831-158984 bp Feature: domain Description: B_ant_repeat Location: 159221-159374 bp Feature: domain Description: B_ant_repeat Location: 1592 2 1-159374 bp Feature: domain Description: B_ant_repeat Location: 159614-159767 bp Feature: domain Description: B_ant_repeat Location: 159614-159767 bp Feature: domain Description: B_ant_repeat Location: 160010-160166 bp Feature: domain Description: B_ant_repeat Location: 160010-160166 bp Feature: domain Description: B_ant_repeat Location: 160406-160562 bp Feature: domain Description: B_ant_repeat Location: 160406-160562 bp Feature: domain Description: B_ant_repeat Location: 160802-160958 bp Feature: domain Description: B_ant_repeat Location: 160802 -160958 bp Feature: domain Description: B_ant_repeat Location: 161198-161351 bp Feature: domain Description: B_ant_repeat Location: 161198-161351 bp Feature: domain Description: B_ant_repeat Location: 161594-161750 bp Feature: domain Description: B_ant_repeat Location: 161594-161750 bp Feature: domain Description: B_ant_repeat Location: 161990-162146 bp Feature: domain Description: B_ant_repeat Location: 161990-162 146 bp Feature: domain Description: B_ant_repeat Location: 162386-162542 bp Feature: domain Description: B_ant_repeat Location: 162 386-162 542 bp Feature: domain Description: B_ant_repeat Location: 162782-162935 bp Feature: domain Description: B_ant_repeat Location: 162 782 -162 935 bp Feature: domain Description: B_ant_repeat Location: 163178-163331 bp Feature: domain Description: B_ant_repeat Location: 163178-163331 bp Feature: domain Description: B_ant_repeat Location: 163574-163730 bp Feature: domain Description: B_ant_repeat Location: 163574-163730 bp Feature: domain Description: B_ant_repeat Location: 163970-164126 bp Feature: domain Description: B_ant_repeat Location: 163970-16412 6 bp Feature: domain Description: B_ant_repeat Location: 164366-164522 bp Feature: domain Description: B_ant_repeat Location: 164366-16452 2 bp Feature: gene Location: 164981-166909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165302-166037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165302 -166037 bp Feature: domain Description: HNHc Note: nucleases Location: 166628-166793 bp Feature: domain Description: HNHc Note: nucleases Location: 16662 8-166793 bp Feature: gene Location: 167166-167345 bp Feature: gene Location: 167916-168329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT B_ant_repeat (TIGR01451), RVT-GII, HNHc (smart00507)

Seq: JZEV01000068.1 Bacillus cereus strain F3162-04 contig1411, whole genome shotgun sequence (71498 bp)
Overview 1 RT 1: 14445-26647 bp Neighborhood of RT #1 [14445, 26706] PrgI RVT-GII HNHc CwlT_like NlpD Spr Feature: gene Location: 14445-14795 bp Feature: domain Description: PrgI Location: 14463-14748 bp Feature: domain Description: PrgI Location: 14463 -14748 bp Feature: gene Location: 14796-15710 bp Feature: gene Location: 17400-19232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17700-18405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17700-18405 bp Feature: domain Description: HNHc Note: nucleases Location: 18984-19116 bp Feature: domain Description: HNHc Note: nucleases Location: 18984-19116 bp Feature: gene Location: 20522-24502 bp Feature: gene Location: 24499-26706 bp Feature: domain Description: CwlT_like Location: 25348-25822 bp Feature: domain Description: CwlT_like Location: 253 48-25822 bp Feature: domain Description: NlpD Location: 25852-26275 bp Feature: domain Description: NlpD Location: 25852-26275 bp Feature: domain Description: Spr Location: 26317-26647 bp Feature: domain Description: Spr Location: 263 17-26647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, HNHc (smart00507), CwlT_like, NlpD (COG0739), Spr (COG0791)

Seq: JZEV01000047.1 Bacillus cereus strain F3162-04 contig1389, whole genome shotgun sequence (74592 bp)
Overview 1 RT 1: 117-4261 bp Neighborhood of RT #1 [117, 4266] RVT_N RVT-GII GIIM MTAN YbaK_EbsC Feature: gene Location: 117-1763 bp Feature: RT Description: RVT_N Location: 159-396 bp Feature: RT Description: RVT_N Location: 159-396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 50-1110 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1410 bp Feature: domain Description: GIIM Note: maturase Location: 1179-14 10 bp Feature: gene Location: 2466-3137 bp Feature: domain Description: MTAN Location: 2472-3066 bp Feature: domain Description: MTAN Location: 24 72-3066 bp Feature: gene Location: 3790-4266 bp Feature: domain Description: YbaK_EbsC Location: 3808-4261 bp Feature: domain Description: YbaK_EbsC Location: 3808-4 261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MTAN (cd09008), YbaK_EbsC (TIGR00011)

Seq: JZEV01000046.1 Bacillus cereus strain F3162-04 contig1387, whole genome shotgun sequence (522158 bp)
Overview 1 RT 1: 109595-115244 bp Neighborhood of RT #1 [109595, 115244] nusA PRK00092 RVT-GII HNHc Feature: gene Location: 109595-110701 bp Feature: domain Description: nusA Location: 109598-110642 bp Feature: domain Description: nusA Location: 1095 98-110642 bp Feature: gene Location: 110719-111189 bp Feature: domain Description: PRK00092 Location: 110725-111187 bp Feature: domain Description: PRK00092 Location: 110725 -111187 bp Feature: gene Location: 113035-114861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113341-114037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113341-114037 bp Feature: domain Description: HNHc Note: nucleases Location: 114583-114742 bp Feature: domain Description: HNHc Note: nucleases Location: 1145 83-114742 bp Feature: gene Location: 115026-115244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nusA (PRK12329), PRK00092 (ribosome maturation protein RimP; Reviewed), RVT-GII, HNHc (smart00507)

Seq: JZEV01000049.1 Bacillus cereus strain F3162-04 contig1392, whole genome shotgun sequence (26130 bp)
Overview 1 RT 1: 615-6378 bp Neighborhood of RT #1 [615, 6378] RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Feature: gene Location: 615-2261 bp Feature: RT Description: RVT_N Location: 657-894 bp Feature: RT Description: RVT_N Location: 6 57-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-16 08 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1908 bp Feature: domain Description: GIIM Note: maturase Location: 16 77-1908 bp Feature: gene Location: 2474-5974 bp Feature: domain Description: TraG-D_C Location: 4091-4451 bp Feature: domain Description: TraG-D_C Location: 4091-4451 bp Feature: domain Description: Ftsk_gamma Location: 4859-5036 bp Feature: domain Description: Ftsk_gamma Location: 4859-5036 bp Feature: domain Description: Ftsk_gamma Location: 5168-5303 bp Feature: domain Description: Ftsk_gamma Location: 516 8-5303 bp Feature: gene Location: 5992-6378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JZEV01000048.1 Bacillus cereus strain F3162-04 contig1391, whole genome shotgun sequence (6653 bp)
Overview 1 RT 1: 615-4687 bp Neighborhood of RT #1 [615, 4878] RVT_N RVT-GII GIIM HTH_3 TPR TPR_12 Hydrolase_4 Feature: gene Location: 615-2261 bp Feature: RT Description: RVT_N Location: 657-894 bp Feature: RT Description: RVT_N Location: 657 -894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1908 bp Feature: domain Description: GIIM Note: maturase Location: 167 7 -1908 bp Feature: gene Location: 2724-3848 bp Feature: domain Description: HTH_3 Location: 2754-2916 bp Feature: domain Description: HTH_3 Location: 27 54-2916 bp Feature: domain Description: TPR Location: 2964-3258 bp Feature: domain Description: TPR Location: 2964-3258 bp Feature: domain Description: TPR_12 Location: 3519-3615 bp Feature: domain Description: TPR_12 Location: 3519-3615 bp Feature: gene Location: 3865-4878 bp Feature: domain Description: Hydrolase_4 Location: 4027-4687 bp Feature: domain Description: Hydrolase_4 Location: 4027 -4687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), TPR (smart00028), TPR_12 (pfam13424), Hydrolase_4 (pfam12146), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)