myRT

myRT report for GCA_001044635.1_ASM104463v1

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Seq: JYPJ01000092.1 Bacillus cereus strain F4429-71 contig516, whole genome shotgun sequence (3113 bp)
Overview 1 RT 1: 734-2450 bp Neighborhood of RT #1 [734, 2566] RVT-GII HNHc Feature: gene Location: 734-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 034-1 739 bp Feature: domain Description: HNHc Note: nucleases Location: 2318-2450 bp Feature: domain Description: HNHc Note: nucleases Location: 231 8-2450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JYPJ01000054.1 Bacillus cereus strain F4429-71 contig476, whole genome shotgun sequence (144140 bp)
Overview 1 RT 1: 137674-143291 bp Neighborhood of RT #1 [137674, 143407] FtsX FtsX RVT-GII HNHc Feature: gene Location: 137674-138810 bp Feature: gene Location: 138941-140791 bp Feature: domain Description: FtsX Location: 139193-139466 bp Feature: domain Description: FtsX Location: 139193-139466 bp Feature: domain Description: FtsX Location: 140528-140735 bp Feature: domain Description: FtsX Location: 14052 8-140735 bp Feature: gene Location: 141575-143407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141875-142580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141875-142 580 bp Feature: domain Description: HNHc Note: nucleases Location: 143159-143291 bp Feature: domain Description: HNHc Note: nucleases Location: 143159-1432 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsX (pfam02687), RVT-GII, HNHc (smart00507)

Seq: JYPJ01000103.1 Bacillus cereus strain F4429-71 contig527, whole genome shotgun sequence (8325 bp)
Overview 1 RT 1: 1378-7476 bp Neighborhood of RT #1 [1378, 7592] RVT-GII HNHc Feature: gene Location: 1378-4101 bp Feature: gene Location: 4098-4607 bp Feature: gene Location: 5760-7592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6060-6765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6060-6765 bp Feature: domain Description: HNHc Note: nucleases Location: 7344-7476 bp Feature: domain Description: HNHc Note: nucleases Location: 73 44-7476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JYPJ01000093.1 Bacillus cereus strain F4429-71 contig517, whole genome shotgun sequence (47084 bp)
Overview 1 RT 1: 116-5326 bp Neighborhood of RT #1 [116, 5361] RVT-GII HNHc YeiB YeiB VanZ RDD Feature: gene Location: 116-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 16-1121 bp Feature: domain Description: HNHc Note: nucleases Location: 1700-1832 bp Feature: domain Description: HNHc Note: nucleases Location: 1700-1832 bp Feature: gene Location: 2802-3857 bp Feature: domain Description: YeiB Location: 2817-3249 bp Feature: domain Description: YeiB Location: 2817-324 9 bp Feature: domain Description: YeiB Location: 3336-3837 bp Feature: domain Description: YeiB Location: 3336-3837 bp Feature: gene Location: 4225-5361 bp Feature: domain Description: VanZ Location: 4372-4807 bp Feature: domain Description: VanZ Location: 4 372-4 807 bp Feature: domain Description: RDD Location: 4873-5326 bp Feature: domain Description: RDD Location: 4 873-5326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), YeiB (COG2311), VanZ (pfam04892), RDD (pfam06271)

Seq: JYPJ01000091.1 Bacillus cereus strain F4429-71 contig515, whole genome shotgun sequence (6991 bp)
Overview 1 RT 1: 734-4949 bp Neighborhood of RT #1 [734, 4960] RVT-GII HNHc YugN CAP_assoc_N CAP_bacterial Feature: gene Location: 734-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1739 bp Feature: domain Description: HNHc Note: nucleases Location: 2318-2450 bp Feature: domain Description: HNHc Note: nucleases Location: 2318-245 0 bp Feature: gene Location: 3353-3718 bp Feature: domain Description: YugN Location: 3371-3620 bp Feature: domain Description: YugN Location: 3371-3620 bp Feature: gene Location: 3926-4960 bp Feature: domain Description: CAP_assoc_N Location: 4106-4523 bp Feature: domain Description: CAP_assoc_N Location: 4106-45 23 bp Feature: domain Description: CAP_bacterial Location: 4607-4949 bp Feature: domain Description: CAP_bacterial Location: 4607-4949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YugN (pfam08868), CAP_assoc_N (pfam14504), CAP_bacterial (cd05379), RVT-GII, HNHc (smart00507)

Seq: JYPJ01000063.1 Bacillus cereus strain F4429-71 contig485, whole genome shotgun sequence (33479 bp)
Overview 1 RT 1: 613-4715 bp Neighborhood of RT #1 [613, 4756] RVT_N RVT-GII GIIM NlpD ParM_like Feature: gene Location: 613-2259 bp Feature: RT Description: RVT_N Location: 655-892 bp Feature: RT Description: RVT_N Location: 6 55-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946 -16 06 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1906 bp Feature: domain Description: GIIM Note: maturase Location: 16 75-1906 bp Feature: gene Location: 2453-3019 bp Feature: domain Description: NlpD Location: 2657-3008 bp Feature: domain Description: NlpD Location: 26 57-3008 bp Feature: gene Location: 3590-4756 bp Feature: domain Description: ParM_like Location: 3656-4715 bp Feature: domain Description: ParM_like Location: 36 56 -4715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JYPJ01000058.1 Bacillus cereus strain F4429-71 contig480, whole genome shotgun sequence (73742 bp)
Overview 1 RT 1: 69139-73511 bp Neighborhood of RT #1 [69139, 73627] CoxD_Bacillus caa3_CtaG RVT-GII HNHc Feature: gene Location: 69139-69471 bp Feature: domain Description: CoxD_Bacillus Location: 69154-69466 bp Feature: domain Description: CoxD_Bacillus Location: 69154-69466 bp Feature: gene Location: 69557-70462 bp Feature: domain Description: caa3_CtaG Location: 69566-70406 bp Feature: domain Description: caa3_CtaG Location: 69566-7 0406 bp Feature: gene Location: 71795-73627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72095-72800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 2095-7 2800 bp Feature: domain Description: HNHc Note: nucleases Location: 73379-73511 bp Feature: domain Description: HNHc Note: nucleases Location: 7 337 9-7 3511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxD_Bacillus (TIGR02908), caa3_CtaG (TIGR02737), RVT-GII, HNHc (smart00507)

Seq: JYPJ01000108.1 Bacillus cereus strain F4429-71 contig532, whole genome shotgun sequence (12740 bp)
Overview 1 RT 1: 7969-11775 bp Neighborhood of RT #1 [7969, 12128] Hydrolase_4 HTH_3 TPR RVT_N RVT-GII GIIM Feature: gene Location: 7969-8985 bp Feature: domain Description: Hydrolase_4 Location: 8131-8791 bp Feature: domain Description: Hydrolase_4 Location: 8 131-8 791 bp Feature: gene Location: 8998-10122 bp Feature: domain Description: HTH_3 Location: 9028-9190 bp Feature: domain Description: HTH_3 Location: 9028 -9190 bp Feature: domain Description: TPR Location: 9565-9871 bp Feature: domain Description: TPR Location: 9565-98 71 bp Feature: gene Location: 10482-12128 bp Feature: RT Description: RVT_N Location: 10524-10761 bp Feature: RT Description: RVT_N Location: 10524-10761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10815-11475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108 15-11475 bp Feature: domain Description: GIIM Note: maturase Location: 11544-11775 bp Feature: domain Description: GIIM Note: maturase Location: 11544-11775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Hydrolase_4 (pfam12146), HTH_3 (pfam01381), TPR (smart00028)

Seq: JYPJ01000031.1 Bacillus cereus strain F4429-71 contig329, whole genome shotgun sequence (99130 bp)
Overview 1 RT 1: 76924-88358 bp Neighborhood of RT #1 [76924, 88358] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc Feature: gene Location: 76924-77994 bp Feature: gene Location: 78272-84637 bp Feature: domain Description: B_ant_repeat Location: 78281-78419 bp Feature: domain Description: B_ant_repeat Location: 78281-78419 bp Feature: domain Description: B_ant_repeat Location: 78656-78809 bp Feature: domain Description: B_ant_repeat Location: 78656-78809 bp Feature: domain Description: B_ant_repeat Location: 79046-79199 bp Feature: domain Description: B_ant_repeat Location: 79 046-79 19 9 bp Feature: domain Description: B_ant_repeat Location: 79439-79592 bp Feature: domain Description: B_ant_repeat Location: 79 439 -79 59 2 bp Feature: domain Description: B_ant_repeat Location: 79835-79991 bp Feature: domain Description: B_ant_repeat Location: 79 835-79 9 9 1 bp Feature: domain Description: B_ant_repeat Location: 80231-80387 bp Feature: domain Description: B_ant_repeat Location: 80231-80387 bp Feature: domain Description: B_ant_repeat Location: 80627-80783 bp Feature: domain Description: B_ant_repeat Location: 80627-80783 bp Feature: domain Description: B_ant_repeat Location: 81023-81176 bp Feature: domain Description: B_ant_repeat Location: 81023-81176 bp Feature: domain Description: B_ant_repeat Location: 81419-81575 bp Feature: domain Description: B_ant_repeat Location: 81419 -81575 bp Feature: domain Description: B_ant_repeat Location: 81815-81971 bp Feature: domain Description: B_ant_repeat Location: 81815-819 71 bp Feature: domain Description: B_ant_repeat Location: 82211-82367 bp Feature: domain Description: B_ant_repeat Location: 82211-82367 bp Feature: domain Description: B_ant_repeat Location: 82607-82760 bp Feature: domain Description: B_ant_repeat Location: 82607-82760 bp Feature: domain Description: B_ant_repeat Location: 83003-83159 bp Feature: domain Description: B_ant_repeat Location: 83003-83159 bp Feature: domain Description: B_ant_repeat Location: 83399-83555 bp Feature: domain Description: B_ant_repeat Location: 8339 9 -83555 bp Feature: domain Description: B_ant_repeat Location: 83795-83951 bp Feature: domain Description: B_ant_repeat Location: 8379 5-839 51 bp Feature: domain Description: B_ant_repeat Location: 84191-84347 bp Feature: domain Description: B_ant_repeat Location: 8419 1-84347 bp Feature: gene Location: 84806-86734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85127-85862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85127-85862 bp Feature: domain Description: HNHc Note: nucleases Location: 86453-86618 bp Feature: domain Description: HNHc Note: nucleases Location: 86453-86618 bp Feature: gene Location: 87741-88154 bp Feature: gene Location: 88167-88358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT B_ant_repeat (TIGR01451), RVT-GII, HNHc (smart00507)

Seq: JYPJ01000062.1 Bacillus cereus strain F4429-71 contig484, whole genome shotgun sequence (25295 bp)
Overview 1 RT 1: 113-3917 bp Neighborhood of RT #1 [113, 3925] RVT_N RVT-GII GIIM DUF2716 YbaK_EbsC Feature: gene Location: 113-1759 bp Feature: RT Description: RVT_N Location: 155-392 bp Feature: RT Description: RVT_N Location: 155-392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-110 6 bp Feature: domain Description: GIIM Note: maturase Location: 1175-1406 bp Feature: domain Description: GIIM Note: maturase Location: 1175-1406 bp Feature: gene Location: 2394-2888 bp Feature: domain Description: DUF2716 Location: 2415-2832 bp Feature: domain Description: DUF2716 Location: 2415-2832 bp Feature: gene Location: 3449-3925 bp Feature: domain Description: YbaK_EbsC Location: 3467-3917 bp Feature: domain Description: YbaK_EbsC Location: 3467-3917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2716 (pfam10898), YbaK_EbsC (TIGR00011)

Seq: JYPJ01000061.1 Bacillus cereus strain F4429-71 contig483, whole genome shotgun sequence (33022 bp)
Overview 1 RT 1: 113-4255 bp 2 RT 2: 31075-32791 bp Neighborhood of RT #1 [113, 4269] RVT_N RVT-GII GIIM nuc_hydro ManC Neighborhood of RT #2 [31075, 32907] RVT-GII HNHc Feature: gene Location: 113-1759 bp Feature: RT Description: RVT_N Location: 155-392 bp Feature: RT Description: RVT_N Location: 155-392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-11 06 bp Feature: domain Description: GIIM Note: maturase Location: 1175-1406 bp Feature: domain Description: GIIM Note: maturase Location: 11 75-1406 bp Feature: gene Location: 2479-3429 bp Feature: domain Description: nuc_hydro Location: 2494-3400 bp Feature: domain Description: nuc_hydro Location: 2494-3400 bp Feature: gene Location: 3691-4269 bp Feature: domain Description: ManC Location: 3889-4255 bp Feature: domain Description: ManC Location: 3889-4255 bp Feature: gene Location: 31075-32907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31375-32080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31375-32080 bp Feature: domain Description: HNHc Note: nucleases Location: 32659-32791 bp Feature: domain Description: HNHc Note: nucleases Location: 32659-32791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), nuc_hydro (cl00226), ManC (COG0662), HNHc (smart00507)