myRT

myRT report for GCA_001044645.1_ASM104464v1

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Seq: JYPI01000007.1 Bacillus cereus strain F3175-03 contig633, whole genome shotgun sequence (51208 bp)
Overview 1 RT 1: 47680-50912 bp Neighborhood of RT #1 [47680, 51028] RVT-GII HNHc Feature: gene Location: 47680-48063 bp Feature: gene Location: 48178-48363 bp Feature: gene Location: 49100-51028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49421-50156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49421 -501 56 bp Feature: domain Description: HNHc Note: nucleases Location: 50747-50912 bp Feature: domain Description: HNHc Note: nucleases Location: 50747-5091 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JYPI01000059.1 Bacillus cereus strain F3175-03 contig688, whole genome shotgun sequence (92950 bp)
Overview 1 RT 1: 88737-92610 bp Neighborhood of RT #1 [88737, 92610] MTS RVT-GII HNHc Feature: gene Location: 88737-88964 bp Feature: gene Location: 88980-90095 bp Feature: domain Description: MTS Location: 89070-89433 bp Feature: domain Description: MTS Location: 89070-89433 bp Feature: gene Location: 90246-92174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90567-91302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90567-91302 bp Feature: domain Description: HNHc Note: nucleases Location: 91893-92058 bp Feature: domain Description: HNHc Note: nucleases Location: 91893-92 058 bp Feature: gene Location: 92431-92610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MTS (pfam05175), RVT-GII, HNHc (smart00507)

Seq: JYPI01000029.1 Bacillus cereus strain F3175-03 contig655, whole genome shotgun sequence (216825 bp)
Overview 1 RT 1: 615-4095 bp Neighborhood of RT #1 [615, 4151] RVT_N RVT-GII GIIM Nfu_N Virulence_fact HEAT DUF393 Feature: gene Location: 615-2261 bp Feature: RT Description: RVT_N Location: 657-894 bp Feature: RT Description: RVT_N Location: 657-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1908 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1908 bp Feature: gene Location: 2637-3764 bp Feature: domain Description: Nfu_N Location: 2655-2898 bp Feature: domain Description: Nfu_N Location: 2655-2898 bp Feature: domain Description: Virulence_fact Location: 2958-3192 bp Feature: domain Description: Virulence_fact Location: 2958-3 192 bp Feature: domain Description: HEAT Location: 3300-3753 bp Feature: domain Description: HEAT Location: 3 3 00-3 753 bp Feature: gene Location: 3768-4151 bp Feature: domain Description: DUF393 Location: 3777-4095 bp Feature: domain Description: DUF3 93 Location: 3 777-4095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nfu_N (smart00932), Virulence_fact (pfam13769), HEAT (sd00044), DUF393 (pfam04134), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JYPI01000013.1 Bacillus cereus strain F3175-03 contig639, whole genome shotgun sequence (50360 bp)
Overview 1 RT 1: 737-9984 bp Neighborhood of RT #1 [737, 10043] RVT-GII HNHc CwlT_like NlpD Spr Feature: gene Location: 737-2569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-174 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2321-2453 bp Feature: domain Description: HNHc Note: nucleases Location: 2321-24 53 bp Feature: gene Location: 3859-7839 bp Feature: gene Location: 7836-10043 bp Feature: domain Description: CwlT_like Location: 8685-9159 bp Feature: domain Description: CwlT_like Location: 8685-9159 bp Feature: domain Description: NlpD Location: 9189-9612 bp Feature: domain Description: NlpD Location: 9189-9612 bp Feature: domain Description: Spr Location: 9654-9984 bp Feature: domain Description: Spr Location: 9654 -9984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JYPI01000032.1 Bacillus cereus strain F3175-03 contig658, whole genome shotgun sequence (40201 bp)
Overview 1 RT 1: 181-3563 bp 2 RT 2: 14573-20124 bp 3 RT 3: 35172-39733 bp Neighborhood of RT #1 [181, 3563] RVT-GII HNHc Neighborhood of RT #2 [14573, 20147] PRK06850 HEPN RVT-GII NT_KNTase_like Neighborhood of RT #3 [35172, 40086] rpsA nuc_hydro RVT_N RVT-GII GIIM Feature: gene Location: 181-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 02-1237 bp Feature: domain Description: HNHc Note: nucleases Location: 1828-1993 bp Feature: domain Description: HNHc Note: nucleases Location: 1828-1993 bp Feature: gene Location: 2366-2545 bp Feature: gene Location: 3150-3563 bp Feature: gene Location: 14573-16345 bp Feature: domain Description: PRK06850 Location: 14588-15818 bp Feature: domain Description: PRK0685 0 Location: 145 88-15 818 bp Feature: gene Location: 16470-16880 bp Feature: domain Description: HEPN Location: 16491-16839 bp Feature: domain Description: HEPN Location: 16491-16839 bp Feature: gene Location: 17059-18990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17380-18115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17380-18115 bp Feature: gene Location: 18987-19190 bp Feature: gene Location: 19749-20147 bp Feature: domain Description: NT_KNTase_like Location: 19824-20124 bp Feature: domain Description: NT_KNTase_like Location: 19824-20124 bp Feature: gene Location: 35172-36155 bp Feature: domain Description: rpsA Location: 35439-35976 bp Feature: domain Description: rpsA Location: 35 439-35 976 bp Feature: gene Location: 36770-37720 bp Feature: domain Description: nuc_hydro Location: 36785-37691 bp Feature: domain Description: nuc_hydro Location: 36785 -37691 bp Feature: gene Location: 38440-40086 bp Feature: RT Description: RVT_N Location: 38482-38719 bp Feature: RT Description: RVT_N Location: 38482-38719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38773-39433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38773-39433 bp Feature: domain Description: GIIM Note: maturase Location: 39502-39733 bp Feature: domain Description: GIIM Note: maturase Location: 395 02-39733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), PRK06850 (hypothetical protein; Provisional), HEPN (smart00748), NT_KNTase_like (cd05403), rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655), GIIM (pfam08388)

Seq: JYPI01000012.1 Bacillus cereus strain F3175-03 contig638, whole genome shotgun sequence (50543 bp)
Overview 1 RT 1: 117-4857 bp 2 RT 2: 42976-49576 bp Neighborhood of RT #1 [117, 4904] RVT-GII HNHc PrgI Neighborhood of RT #2 [42976, 49929] TraG-D_C Ftsk_gamma Ftsk_gamma DDE_Tnp_1 RVT_N RVT-GII GIIM Feature: gene Location: 117-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-1122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-1122 bp Feature: domain Description: HNHc Note: nucleases Location: 1701-1833 bp Feature: domain Description: HNHc Note: nucleases Location: 1701-1833 bp Feature: gene Location: 3639-4553 bp Feature: gene Location: 4554-4904 bp Feature: domain Description: PrgI Location: 4572-4857 bp Feature: domain Description: PrgI Location: 4572-4857 bp Feature: gene Location: 42976-46476 bp Feature: domain Description: TraG-D_C Location: 44593-44953 bp Feature: domain Description: TraG-D_C Location: 44593-44953 bp Feature: domain Description: Ftsk_gamma Location: 45361-45538 bp Feature: domain Description: Ftsk_gamma Location: 4536 1-45538 bp Feature: domain Description: Ftsk_gamma Location: 45670-45805 bp Feature: domain Description: Ftsk_gamma Location: 456 70-45805 bp Feature: gene Location: 46660-48030 bp Feature: domain Description: DDE_Tnp_1 Location: 47014-47752 bp Feature: domain Description: DDE_Tnp_1 Location: 47014-47752 bp Feature: gene Location: 48283-49929 bp Feature: RT Description: RVT_N Location: 48325-48562 bp Feature: RT Description: RVT_N Location: 48325-4856 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48616-49276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486 16 -49276 bp Feature: domain Description: GIIM Note: maturase Location: 49345-49576 bp Feature: domain Description: GIIM Note: maturase Location: 49345-49576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), PrgI (pfam12666), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), GIIM (pfam08388)

Seq: JYPI01000014.1 Bacillus cereus strain F3175-03 contig640, whole genome shotgun sequence (240526 bp)
Overview 1 RT 1: 737-4949 bp Neighborhood of RT #1 [737, 4960] RVT-GII HNHc YugN CAP_assoc_N CAP_bacterial Feature: gene Location: 737-2569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037 -17 42 bp Feature: domain Description: HNHc Note: nucleases Location: 2321-2453 bp Feature: domain Description: HNHc Note: nucleases Location: 2321-2453 bp Feature: gene Location: 3356-3721 bp Feature: domain Description: YugN Location: 3374-3635 bp Feature: domain Description: YugN Location: 337 4-3635 bp Feature: gene Location: 3926-4960 bp Feature: domain Description: CAP_assoc_N Location: 4106-4523 bp Feature: domain Description: CAP_assoc_N Location: 4106-4523 bp Feature: domain Description: CAP_bacterial Location: 4607-4949 bp Feature: domain Description: CAP_bacterial Location: 4607 -4949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YugN (pfam08868), CAP_assoc_N (pfam14504), CAP_bacterial (cd05379), RVT-GII, HNHc (smart00507)

Seq: JYPI01000028.1 Bacillus cereus strain F3175-03 contig654, whole genome shotgun sequence (54309 bp)
Overview 1 RT 1: 116-3747 bp Neighborhood of RT #1 [116, 3749] RVT_N RVT-GII GIIM AAA_18 PRK06752 Feature: gene Location: 116-1762 bp Feature: RT Description: RVT_N Location: 158-395 bp Feature: RT Description: RVT_N Location: 158 -395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1109 bp Feature: domain Description: GIIM Note: maturase Location: 1178-1409 bp Feature: domain Description: GIIM Note: maturase Location: 1178 -1409 bp Feature: gene Location: 2517-3077 bp Feature: domain Description: AAA_18 Location: 2532-2925 bp Feature: domain Description: AAA_18 Location: 2532-2925 bp Feature: gene Location: 3414-3749 bp Feature: domain Description: PRK06752 Location: 3417-3747 bp Feature: domain Description: PRK06752 Location: 3417-3747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AAA_18 (pfam13238), PRK06752 (single-stranded DNA-binding protein; Validated)

Seq: JYPI01000049.1 Bacillus cereus strain F3175-03 contig676, whole genome shotgun sequence (264155 bp)
Overview 1 RT 1: 253563-263815 bp Neighborhood of RT #1 [253563, 263815] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc Feature: gene Location: 253563-254633 bp Feature: gene Location: 254917-261282 bp Feature: domain Description: B_ant_repeat Location: 254926-255061 bp Feature: domain Description: B_ant_repeat Location: 2549 26-255061 bp Feature: domain Description: B_ant_repeat Location: 255301-255454 bp Feature: domain Description: B_ant_repeat Location: 255301-255454 bp Feature: domain Description: B_ant_repeat Location: 255691-255844 bp Feature: domain Description: B_ant_repeat Location: 25569 1-255844 bp Feature: domain Description: B_ant_repeat Location: 256084-256237 bp Feature: domain Description: B_ant_repeat Location: 256084-256237 bp Feature: domain Description: B_ant_repeat Location: 256480-256633 bp Feature: domain Description: B_ant_repeat Location: 256480-256633 bp Feature: domain Description: B_ant_repeat Location: 256876-257032 bp Feature: domain Description: B_ant_repeat Location: 256876-257032 bp Feature: domain Description: B_ant_repeat Location: 257272-257428 bp Feature: domain Description: B_ant_repeat Location: 257272-257428 bp Feature: domain Description: B_ant_repeat Location: 257668-257821 bp Feature: domain Description: B_ant_repeat Location: 257668-257821 bp Feature: domain Description: B_ant_repeat Location: 258064-258220 bp Feature: domain Description: B_ant_repeat Location: 258064-258220 bp Feature: domain Description: B_ant_repeat Location: 258460-258613 bp Feature: domain Description: B_ant_repeat Location: 258460-258613 bp Feature: domain Description: B_ant_repeat Location: 258856-259012 bp Feature: domain Description: B_ant_repeat Location: 258856-259 012 bp Feature: domain Description: B_ant_repeat Location: 259252-259408 bp Feature: domain Description: B_ant_repeat Location: 259 252-259 408 bp Feature: domain Description: B_ant_repeat Location: 259648-259804 bp Feature: domain Description: B_ant_repeat Location: 259 648-259 804 bp Feature: domain Description: B_ant_repeat Location: 260044-260197 bp Feature: domain Description: B_ant_repeat Location: 260044-26019 7 bp Feature: domain Description: B_ant_repeat Location: 260440-260596 bp Feature: domain Description: B_ant_repeat Location: 260440-26059 6 bp Feature: domain Description: B_ant_repeat Location: 260836-260992 bp Feature: domain Description: B_ant_repeat Location: 260836-2609 9 2 bp Feature: gene Location: 261451-263379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261772-262507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261772-262507 bp Feature: domain Description: HNHc Note: nucleases Location: 263098-263263 bp Feature: domain Description: HNHc Note: nucleases Location: 26309 8-263263 bp Feature: gene Location: 263636-263815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT B_ant_repeat (TIGR01451), RVT-GII, HNHc (smart00507)

Seq: JYPI01000022.1 Bacillus cereus strain F3175-03 contig648, whole genome shotgun sequence (452143 bp)
Overview 1 RT 1: 447544-451911 bp Neighborhood of RT #1 [447544, 452027] CoxD_Bacillus caa3_CtaG RVT-GII HNHc Feature: gene Location: 447544-447876 bp Feature: domain Description: CoxD_Bacillus Location: 447559-447871 bp Feature: domain Description: CoxD_Bacillus Location: 447559-447871 bp Feature: gene Location: 447957-448862 bp Feature: domain Description: caa3_CtaG Location: 447966-448806 bp Feature: domain Description: caa3_CtaG Location: 447966-448806 bp Feature: gene Location: 450195-452027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450495-451200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450495-451200 bp Feature: domain Description: HNHc Note: nucleases Location: 451779-451911 bp Feature: domain Description: HNHc Note: nucleases Location: 451779-451911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxD_Bacillus (TIGR02908), caa3_CtaG (TIGR02737), RVT-GII, HNHc (smart00507)