myRT

myRT report for GCA_001046635.1_N.barLL02

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Seq: KQ130458.1 Novosphingobium barchaimii LL02 genomic scaffold 25411_scaffold_07, whole genome shotgun sequence (241614 bp)
Overview 1 RT 1: 70-4231 bp 2 RT 2: 77097-81838 bp 3 RT 3: 92300-96746 bp Neighborhood of RT #1 [70, 5727] RVT-GII Intron_maturas2 HNHc GIY-YIG PLDc_unchar6 PLDc_unchar6 Neighborhood of RT #2 [77097, 81838] RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [92300, 96751] RVT-GII Intron_maturas2 HNHc DUF3768 Feature: gene Location: 70-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-1168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-1 1 68 bp Feature: domain Description: Intron_maturas2 Location: 1309-1567 bp Feature: domain Description: Intron_maturas2 Location: 1 309-1 567 bp Feature: domain Description: HNHc Note: nucleases Location: 1735-1882 bp Feature: domain Description: HNHc Note: nucleases Location: 1 735-1 882 bp Feature: gene Location: 2582-3127 bp Feature: domain Description: GIY-YIG Location: 2663-2786 bp Feature: domain Description: GIY-YIG Location: 2663-2786 bp Feature: gene Location: 3259-5727 bp Feature: domain Description: PLDc_unchar6 Location: 3511-3613 bp Feature: domain Description: PLDc_unchar6 Location: 351 1 -361 3 bp Feature: domain Description: PLDc_unchar6 Location: 3904-4231 bp Feature: domain Description: PLDc_unchar6 Location: 3904-4231 bp Feature: gene Location: 77097-77732 bp Feature: gene Location: 77757-78023 bp Feature: gene Location: 78642-80528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78882-79719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78882-7971 9 bp Feature: domain Description: Intron_maturas2 Location: 79851-80091 bp Feature: domain Description: Intron_maturas2 Location: 79851 -80091 bp Feature: domain Description: HNHc Note: nucleases Location: 80268-80418 bp Feature: domain Description: HNHc Note: nucleases Location: 80268-8041 8 bp Feature: gene Location: 80533-80922 bp Feature: gene Location: 80915-81838 bp Feature: gene Location: 92300-92464 bp Feature: gene Location: 92514-93047 bp Feature: gene Location: 93189-95054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93456-94287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93456-94287 bp Feature: domain Description: Intron_maturas2 Location: 94428-94686 bp Feature: domain Description: Intron_maturas2 Location: 94428-94686 bp Feature: domain Description: HNHc Note: nucleases Location: 94854-95001 bp Feature: domain Description: HNHc Note: nucleases Location: 94854-95001 bp Feature: gene Location: 95701-96144 bp Feature: gene Location: 96356-96751 bp Feature: domain Description: DUF3768 Location: 96476-96746 bp Feature: domain Description: DUF3768 Location: 96476-96746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG (pfam01541), PLDc_unchar6 (cd09176), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3768 (pfam12599)

Seq: KQ130465.1 Novosphingobium barchaimii LL02 genomic scaffold 25411_scaffold_14, whole genome shotgun sequence (25289 bp)
Overview 1 RT 1: 19400-24394 bp Neighborhood of RT #1 [19400, 24399] ParAB_family SprT-like RVT-GII Intron_maturas2 HNHc COG4737 YiaG Feature: gene Location: 19400-20053 bp Feature: domain Description: ParAB_family Location: 19409-19853 bp Feature: domain Description: ParAB_family Location: 19409-19853 bp Feature: gene Location: 20140-20778 bp Feature: domain Description: SprT-like Location: 20200-20473 bp Feature: domain Description: SprT-like Location: 2 02 00-2 0473 bp Feature: gene Location: 21661-23526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21928-22759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 192 8-2 2 759 bp Feature: domain Description: Intron_maturas2 Location: 22900-23158 bp Feature: domain Description: Intron_maturas2 Location: 2 2 900-2 3158 bp Feature: domain Description: HNHc Note: nucleases Location: 23326-23473 bp Feature: domain Description: HNHc Note: nucleases Location: 2 332 6-2 3473 bp Feature: gene Location: 23709-24092 bp Feature: domain Description: COG4737 Location: 23739-24081 bp Feature: domain Description: COG4737 Location: 2 3739-2 4081 bp Feature: gene Location: 24076-24399 bp Feature: domain Description: YiaG Location: 24091-24394 bp Feature: domain Description: YiaG Location: 2 4091-2 4394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParAB_family (cd02042), SprT-like (pfam10263), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG4737 (Uncharacterized protein ), YiaG (COG2944)