myRT

myRT report for GCA_001046855.1_ASM104685v1

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Seq: HF570958.1 Tetrasphaera japonica T1-X7 genomic scaffold, 1540_scaffold1, whole genome shotgun sequence (5162321 bp)
Overview 1 RT 1: 386478-390240 bp 2 RT 2: 1199257-1202177 bp 3 RT 3: 4888288-4893373 bp Neighborhood of RT #1 [386478, 391034] DDE_Tnp_1_4 RVT-GII GIIM SIR2-like Neighborhood of RT #2 [1199257, 1202177] PRK08317 RVT-GII GIIM Neighborhood of RT #3 [4888288, 4893432] YhhI RVT-GII Usp Usp PucR GGDEF_2 HTH_30 Feature: gene Location: 386478-386663 bp Feature: gene Location: 386938-388272 bp Ori: CCH79823.1 Feature: domain Description: DDE_Tnp_1_4 Location: 387061-387826 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 387061 -387826 bp Feature: gene Location: 388379-389527 bp Ori: CCH79824.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388544-388949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388544-388949 bp Feature: gene Location: 388513-388824 bp Ori: CCH79825.1 Feature: domain Description: GIIM Note: maturase Location: 388522-388675 bp Feature: domain Description: GIIM Note: maturase Location: 388522-388675 bp Feature: gene Location: 389508-391034 bp Ori: CCH79826.1 Feature: domain Description: SIR2-like Location: 389565-390240 bp Feature: domain Description: SIR2-like Location: 389565-390240 bp Feature: gene Location: 1199257-1199490 bp Feature: gene Location: 1199512-1200153 bp Ori: CCH78356.1 Feature: domain Description: PRK08317 Location: 1199644-1200004 bp Feature: domain Description: PRK0831 7 Location: 1 1 99644-1 200004 bp Feature: gene Location: 1200258-1200830 bp Ori: CCH78357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1200270-1200402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 200270-1 200402 bp Feature: domain Description: GIIM Note: maturase Location: 1200474-1200693 bp Feature: domain Description: GIIM Note: maturase Location: 1 200474-1 200693 bp Feature: gene Location: 1201415-1201648 bp Feature: gene Location: 1201767-1202177 bp Feature: gene Location: 4888288-4888560 bp Ori: CCH79126.1 Feature: domain Description: YhhI Location: 4888366-4888504 bp Feature: domain Description: YhhI Location: 4888366-4888504 bp Feature: gene Location: 4888761-4889057 bp Feature: gene Location: 4889081-4890400 bp Ori: CCH79128.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4889345-4890137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4889345-48901 37 bp Feature: gene Location: 4890264-4891142 bp Ori: CCH79129.1 Feature: domain Description: Usp Location: 4890270-4890672 bp Feature: domain Description: Usp Location: 4890270-4890672 bp Feature: domain Description: Usp Location: 4890711-4891131 bp Feature: domain Description: Usp Location: 489071 1 -4891 1 31 bp Feature: gene Location: 4891819-4893432 bp Ori: CCH79130.1 Feature: domain Description: PucR Location: 4891840-4892203 bp Feature: domain Description: PucR Location: 4891 840-4892203 bp Feature: domain Description: GGDEF_2 Location: 4892671-4893031 bp Feature: domain Description: GGDEF_2 Location: 4892671 -4893031 bp Feature: domain Description: HTH_30 Location: 4893202-4893373 bp Feature: domain Description: HTH_30 Location: 4893202-4893373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), SIR2-like (cd01406), PRK08317 (hypothetical protein; Provisional), YhhI (COG5433), Usp (pfam00582), PucR (pfam07905), GGDEF_2 (pfam17853), HTH_30 (pfam13556)