myRT

myRT report for GCA_001048515.1_VRSK39_PRJEB5882

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Seq: CCKB01000115.1 Vibrio crassostreae genome assembly VRSK39_PRJEB5882, contig VRSK39_Contig_71, whole genome shotgun sequence (84711 bp)
Overview 1 RT 1: 67887-73038 bp Neighborhood of RT #1 [67887, 73076] HTH_29 rve HTH_29 RVT_N RVT-GII GIIM DUF4238 Feature: gene Location: 67887-69395 bp Feature: domain Description: HTH_29 Location: 67923-68076 bp Feature: domain Description: HTH_29 Location: 67923-68076 bp Feature: domain Description: rve Location: 68295-68634 bp Feature: domain Description: rve Location: 68295-68634 bp Feature: domain Description: HTH_29 Location: 69045-69213 bp Feature: domain Description: HTH_29 Location: 69045-6921 3 bp Feature: gene Location: 69490-69672 bp Feature: gene Location: 69684-71315 bp Feature: RT Description: RVT_N Location: 69891-70134 bp Feature: RT Description: RVT_N Location: 69891 -701 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70179-70806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 79-70806 bp Feature: domain Description: GIIM Note: maturase Location: 70866-71091 bp Feature: domain Description: GIIM Note: maturase Location: 70866-71 091 bp Feature: gene Location: 71230-71508 bp Feature: gene Location: 72144-73076 bp Feature: domain Description: DUF4238 Location: 72168-73038 bp Feature: domain Description: DUF4238 Location: 721 68-73038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), rve (pfam00665), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4238 (pfam14022)

Seq: CCKB01000105.1 Vibrio crassostreae genome assembly VRSK39_PRJEB5882, contig VRSK39_Contig_62, whole genome shotgun sequence (14131 bp)
Overview 1 RT 1: 704-6458 bp Neighborhood of RT #1 [704, 6458] RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 704-2461 bp Feature: gene Location: 2548-3894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830-3448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 830-3448 bp Feature: domain Description: GIIM Note: maturase Location: 3493-3703 bp Feature: domain Description: GIIM Note: maturase Location: 3493-3703 bp Feature: gene Location: 4790-5713 bp Feature: domain Description: DDE_Tnp_1 Location: 5069-5684 bp Feature: domain Description: DDE_Tnp_1 Location: 5069-5684 bp Feature: gene Location: 5874-6458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: CCKB01000031.1 Vibrio crassostreae genome assembly VRSK39_PRJEB5882, contig VRSK39_Contig_126, whole genome shotgun sequence (16555 bp)
Overview 1 RT 1: 12207-14932 bp Neighborhood of RT #1 [12207, 14932] DDE_Tnp_IS240 RadC RVT-GII GIIM HNHc Feature: gene Location: 12207-12431 bp Feature: domain Description: DDE_Tnp_IS240 Location: 12219-12378 bp Feature: domain Description: DDE_Tnp_IS240 Location: 12219-123 78 bp Feature: gene Location: 12486-12572 bp Feature: domain Description: RadC Location: 12492-12570 bp Feature: domain Description: RadC Location: 12492-12570 bp Feature: gene Location: 12675-14072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12678-13278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12678-13 278 bp Feature: domain Description: GIIM Note: maturase Location: 13344-13557 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 44-13 557 bp Feature: domain Description: HNHc Note: nucleases Location: 13845-13989 bp Feature: domain Description: HNHc Note: nucleases Location: 13 845-13 989 bp Feature: gene Location: 14310-14426 bp Feature: gene Location: 14630-14932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), RadC (pfam04002), RVT-GII, GIIM (pfam08388), HNHc (smart00507)