myRT

myRT report for GCA_001048555.1_VLGP8_PRJEB5884

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Seq: CCKE01000172.1 Vibrio crassostreae genome assembly VLGP8_PRJEB5884, contig VLGP8_Contig_94, whole genome shotgun sequence (12178 bp)
Overview 1 RT 1: 3576-8947 bp Neighborhood of RT #1 [3576, 8961] HTH_32 rve NUMOD1 HTH_32 RadC RVT-GII GIIM HNHc Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Feature: gene Location: 3576-5096 bp Feature: domain Description: HTH_32 Location: 3690-3906 bp Feature: domain Description: HTH_32 Location: 3690-3906 bp Feature: domain Description: rve Location: 3990-4332 bp Feature: domain Description: rve Location: 3990-4332 bp Feature: domain Description: NUMOD1 Location: 4767-4815 bp Feature: domain Description: NUMOD1 Location: 4767-481 5 bp Feature: domain Description: HTH_32 Location: 4815-5028 bp Feature: domain Description: HTH_32 Location: 481 5-5028 bp Feature: gene Location: 5229-5480 bp Feature: domain Description: RadC Location: 5346-5478 bp Feature: domain Description: RadC Location: 5346-5478 bp Feature: gene Location: 5413-6810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5416-6016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 6-601 6 bp Feature: domain Description: GIIM Note: maturase Location: 6082-6295 bp Feature: domain Description: GIIM Note: maturase Location: 6082-6295 bp Feature: domain Description: HNHc Note: nucleases Location: 6583-6727 bp Feature: domain Description: HNHc Note: nucleases Location: 6583-6727 bp Feature: gene Location: 7371-7661 bp Feature: gene Location: 7582-8961 bp Feature: domain Description: Tnp_DNA_bind Location: 7609-7780 bp Feature: domain Description: Tnp_DNA_bind Location: 7609-7780 bp Feature: domain Description: DDE_Tnp_1 Location: 8152-8662 bp Feature: domain Description: DDE_Tnp_1 Location: 81 52-8662 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 8686-8947 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 8686-8947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve (pfam00665), NUMOD1 (pfam07453), RadC (pfam04002), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281)