myRT

myRT report for GCA_001048695.1_PRJEB8581_assembly_1

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Seq: CVRB01000006.1 Bacillus sp. LF1 genome assembly PRJEB8581_assembly_1, contig CONTIG000006, whole genome shotgun sequence (298560 bp)
Overview 1 RT 1: 24438-28492 bp Neighborhood of RT #1 [24438, 28492] RimL COG4627 RVT-GII GIIM Feature: gene Location: 24438-24965 bp Feature: domain Description: RimL Location: 24576-24930 bp Feature: domain Description: RimL Location: 24576-24930 bp Feature: gene Location: 25106-25669 bp Feature: domain Description: COG4627 Location: 25130-25664 bp Feature: domain Description: COG4627 Location: 251 30-25664 bp Feature: gene Location: 25912-27240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26167-26860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 67-26860 bp Feature: domain Description: GIIM Note: maturase Location: 26944-27154 bp Feature: domain Description: GIIM Note: maturase Location: 26944-271 54 bp Feature: gene Location: 27197-27370 bp Feature: gene Location: 28178-28492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), COG4627 (Predicted SAM-depedendent methyltransferase ), RVT-GII, GIIM (pfam08388)

Seq: CVRB01000003.1 Bacillus sp. LF1 genome assembly PRJEB8581_assembly_1, contig CONTIG000003, whole genome shotgun sequence (1022341 bp)
Overview 1 RT 1: 386002-390522 bp 2 RT 2: 716395-720730 bp Neighborhood of RT #1 [386002, 390578] PRTases_typeI RVT-Retrons CodB Neighborhood of RT #2 [716395, 720730] CspC DUF4241 RVT-GII GIIM Feature: gene Location: 386002-387021 bp Feature: domain Description: PRTases_typeI Location: 386437-386593 bp Feature: domain Description: PRTases_typeI Location: 386437-386593 bp Feature: gene Location: 387032-387415 bp Feature: gene Location: 387560-388567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 387773-388325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 387773-38832 5 bp Feature: gene Location: 389053-389193 bp Feature: gene Location: 389190-390578 bp Feature: domain Description: CodB Location: 389208-390522 bp Feature: domain Description: CodB Location: 3892 08-39052 2 bp Feature: gene Location: 716395-716595 bp Feature: domain Description: CspC Location: 716398-716590 bp Feature: domain Description: CspC Location: 716398-716590 bp Feature: gene Location: 716915-717559 bp Feature: domain Description: DUF4241 Location: 717017-717539 bp Feature: domain Description: DUF42 41 Location: 717017-717539 bp Feature: gene Location: 717756-719063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718011-718704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718011-718704 bp Feature: domain Description: GIIM Note: maturase Location: 718767-718977 bp Feature: domain Description: GIIM Note: maturase Location: 718767-718977 bp Feature: gene Location: 719020-719193 bp Feature: gene Location: 720422-720730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTases_typeI (cl00309), RVT-Retrons, CodB (COG1457), CspC (COG1278), DUF4241 (pfam14025), RVT-GII, GIIM (pfam08388)

Seq: CVRB01000005.1 Bacillus sp. LF1 genome assembly PRJEB8581_assembly_1, contig CONTIG000005, whole genome shotgun sequence (314173 bp)
Overview 1 RT 1: 98715-105084 bp Neighborhood of RT #1 [98715, 105084] COG4420 RVT-GII GIIM Sortilin-Vps10 Sortilin-Vps10 Sortilin-Vps10 COG4447 Sortilin-Vps10 COG3292 Feature: gene Location: 98715-99554 bp Feature: gene Location: 99791-100372 bp Feature: domain Description: COG4420 Location: 99905-100358 bp Feature: domain Description: COG4420 Location: 99905-1003 58 bp Feature: gene Location: 100658-101362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100691-100982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100691-100982 bp Feature: domain Description: GIIM Note: maturase Location: 101066-101276 bp Feature: domain Description: GIIM Note: maturase Location: 101066-101276 bp Feature: gene Location: 102040-104403 bp Feature: domain Description: Sortilin-Vps10 Location: 102418-102691 bp Feature: domain Description: Sortilin-Vps10 Location: 102418-102691 bp Feature: domain Description: Sortilin-Vps10 Location: 102712-103057 bp Feature: domain Description: Sortilin-Vps10 Location: 102712-103 057 bp Feature: domain Description: Sortilin-Vps10 Location: 103204-103348 bp Feature: domain Description: Sortilin-Vps10 Location: 103 204-103 3 48 bp Feature: domain Description: COG4447 Location: 103537-103642 bp Feature: domain Description: COG4447 Location: 103 53 7-103 642 bp Feature: domain Description: Sortilin-Vps10 Location: 103777-104113 bp Feature: domain Description: Sortilin-Vps10 Location: 103 777-104113 bp Feature: domain Description: COG3292 Location: 104191-104365 bp Feature: domain Description: COG3 292 Location: 104191-1043 65 bp Feature: gene Location: 104749-105084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Sortilin-Vps10 (pfam15902), COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), COG3292 (Periplasmic ligand-binding sensor domain ), COG4420 (Uncharacterized membrane protein )