myRT

myRT report for GCA_001049535.1_3731

Download annotations/find similar RTs

Seq: CVOY01000003.1 Bacteroides thetaiotaomicron genome assembly 3731, contig Contig1.2, whole genome shotgun sequence (221204 bp)
Overview 1 RT 1: 130475-142316 bp Neighborhood of RT #1 [130475, 142432] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 130475-130675 bp Feature: gene Location: 131077-133263 bp Feature: gene Location: 133469-134602 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133793-134345 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 33793-1 34345 bp Feature: gene Location: 134636-140464 bp Feature: domain Description: DUF4011 Location: 135791-136304 bp Feature: domain Description: DUF401 1 Location: 1 35791 -1 36304 bp Feature: domain Description: DEXXQc_SF1 Location: 136643-137243 bp Feature: domain Description: DEXXQc_SF1 Location: 1 36643-1 37243 bp Feature: domain Description: DEXXQc_SF1 Location: 138080-138830 bp Feature: domain Description: DEXXQc_SF1 Location: 1 38080-1 38830 bp Feature: domain Description: TIGR00376 Location: 138962-139352 bp Feature: domain Description: TIGR00376 Location: 1 38962-1 39352 bp Feature: domain Description: MTES_1575 Location: 139502-139790 bp Feature: domain Description: MTES_1 575 Location: 1 39502-1 39790 bp Feature: domain Description: DUF3320 Location: 139970-140114 bp Feature: domain Description: DUF3320 Location: 1 39970-1 401 1 4 bp Feature: gene Location: 140633-142432 bp Feature: domain Description: rpsA Location: 140702-142316 bp Feature: domain Description: rpsA Location: 1 40702-1 4231 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: CVOY01000023.1 Bacteroides thetaiotaomicron genome assembly 3731, contig Contig13.2, whole genome shotgun sequence (109131 bp)
Overview 1 RT 1: 83175-90550 bp Neighborhood of RT #1 [83175, 90550] NGN_SP_UpxY RfaH RVT-AbiP2 Feature: gene Location: 83175-83387 bp Feature: gene Location: 83716-84417 bp Feature: domain Description: NGN_SP_UpxY Location: 83887-84193 bp Feature: domain Description: NGN_SP_UpxY Location: 83887-84193 bp Feature: domain Description: RfaH Location: 84193-84394 bp Feature: domain Description: RfaH Location: 84193-84394 bp Feature: gene Location: 84424-86031 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 84856-85312 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 84856-85312 bp Feature: gene Location: 86164-86331 bp Feature: gene Location: 86366-90550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), RfaH (TIGR01955), RVT-AbiP2

Seq: CVOY01000027.1 Bacteroides thetaiotaomicron genome assembly 3731, contig Contig17.1, whole genome shotgun sequence (96244 bp)
Overview 1 RT 1: 35560-43971 bp Neighborhood of RT #1 [35560, 45767] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 35560-36705 bp Feature: domain Description: Arm-DNA-bind_5 Location: 35584-35830 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3 5584-3 583 0 bp Feature: domain Description: Phage_int_SAM_5 Location: 35869-36154 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 5869-3 6154 bp Feature: domain Description: INTN1_C_like Location: 36193-36667 bp Feature: domain Description: INTN1_C_like Location: 3 6193 -3 6667 bp Feature: gene Location: 36755-37249 bp Feature: gene Location: 37251-38606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37527-38118 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 7527-3 8118 bp Feature: gene Location: 38751-38918 bp Feature: gene Location: 38979-45767 bp Feature: domain Description: Laminin_G_3 Location: 41415-41796 bp Feature: domain Description: Laminin_G_3 Location: 41415-41796 bp Feature: domain Description: pfam08757 Location: 42591-42915 bp Feature: domain Description: pfam08757 Location: 42591-42915 bp Feature: domain Description: LRR_AMN1 Location: 43527-43971 bp Feature: domain Description: LRR_AMN1 Location: 43 527-43 971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: CVOY01000052.1 Bacteroides thetaiotaomicron genome assembly 3731, contig Contig36.2, whole genome shotgun sequence (29495 bp)
Overview 1 RT 1: 25807-27350 bp Neighborhood of RT #1 [25807, 27350] HTH_28 RVT-GII Feature: gene Location: 25807-25959 bp Feature: gene Location: 26137-26427 bp Feature: domain Description: HTH_28 Location: 26161-26305 bp Feature: domain Description: HTH_28 Location: 26161-26305 bp Feature: gene Location: 26548-26745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26551-26743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26551-2674 3 bp Feature: gene Location: 26775-26984 bp Feature: gene Location: 26988-27350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: CVOY01000066.1 Bacteroides thetaiotaomicron genome assembly 3731, contig Contig47.1, whole genome shotgun sequence (70511 bp)
Overview 1 RT 1: 42875-47584 bp Neighborhood of RT #1 [42875, 47598] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 42875-43048 bp Feature: domain Description: Bac_Flav_CT_G Location: 42878-43034 bp Feature: domain Description: Bac_Flav_CT_G Location: 42878-43034 bp Feature: gene Location: 43055-43333 bp Feature: domain Description: Bac_Flav_CT_G Location: 43073-43331 bp Feature: domain Description: Bac_Flav_CT_G Location: 43073-43331 bp Feature: gene Location: 43411-45222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43675-44497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43675 -44497 bp Feature: domain Description: Intron_maturas2 Location: 44572-44887 bp Feature: domain Description: Intron_maturas2 Location: 445 72-44887 bp Feature: domain Description: HNHc Note: nucleases Location: 45043-45193 bp Feature: domain Description: HNHc Note: nucleases Location: 45 043-45 193 bp Feature: gene Location: 45568-45741 bp Feature: gene Location: 45769-47598 bp Feature: domain Description: Bac_Flav_CT_G Location: 45772-47584 bp Feature: domain Description: Bac_Flav_CT_G Location: 45 772-475 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)