myRT

myRT report for GCA_001049555.1_7330

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Seq: CVOZ01000006.1 Bacteroides thetaiotaomicron genome assembly 7330, contig 7330contig0.6, whole genome shotgun sequence (47628 bp)
Overview 1 RT 1: 3333-12325 bp Neighborhood of RT #1 [3333, 12438] Glyco_hydro_88 group_II_RT_mat RVT-GII KOG4768 RVT-GII Intron_maturas2 Trehalase GDB1 SGSH Feature: gene Location: 3333-4451 bp Feature: domain Description: Glyco_hydro_88 Location: 3525-4440 bp Feature: domain Description: Glyco_hydro_88 Location: 3525-4440 bp Feature: gene Location: 5992-6180 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5998-6145 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5998-61 45 bp Feature: gene Location: 6275-6418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6278-6398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6278-6398 bp Feature: gene Location: 6489-6680 bp Feature: domain Description: KOG4768 Location: 6546-6678 bp Feature: domain Description: KOG4768 Location: 6546-6678 bp Feature: gene Location: 6720-7268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6726-6792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6726-6792 bp Feature: domain Description: Intron_maturas2 Location: 6864-7173 bp Feature: domain Description: Intron_maturas2 Location: 6864-71 73 bp Feature: gene Location: 7663-10410 bp Feature: domain Description: Trehalase Location: 9085-9187 bp Feature: domain Description: Trehalase Location: 9085-91 87 bp Feature: domain Description: GDB1 Location: 9277-10006 bp Feature: domain Description: GDB1 Location: 9277-1 0006 bp Feature: gene Location: 10849-12438 bp Feature: domain Description: SGSH Location: 10993-12325 bp Feature: domain Description: SGSH Location: 1 0993-1 2325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_88 (pfam07470), group_II_RT_mat (TIGR04416), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Intron_maturas2 (pfam01348), Trehalase (pfam01204), GDB1 (COG3408), SGSH (cd16027)

Seq: CVOZ01000025.1 Bacteroides thetaiotaomicron genome assembly 7330, contig 7330contig0.25, whole genome shotgun sequence (270242 bp)
Overview 1 RT 1: 94410-99106 bp 2 RT 2: 167410-168953 bp Neighborhood of RT #1 [94410, 99123] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #2 [167410, 168953] HTH_28 RVT-GII Feature: gene Location: 94410-94583 bp Feature: domain Description: Bac_Flav_CT_G Location: 94413-94569 bp Feature: domain Description: Bac_Flav_CT_G Location: 94413-94569 bp Feature: gene Location: 94590-94889 bp Feature: domain Description: Bac_Flav_CT_G Location: 94623-94887 bp Feature: domain Description: Bac_Flav_CT_G Location: 9462 3-94887 bp Feature: gene Location: 94946-96757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95210-96032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952 10-96032 bp Feature: domain Description: Intron_maturas2 Location: 96107-96422 bp Feature: domain Description: Intron_maturas2 Location: 96107-9642 2 bp Feature: domain Description: HNHc Note: nucleases Location: 96578-96728 bp Feature: domain Description: HNHc Note: nucleases Location: 96578-9672 8 bp Feature: gene Location: 97304-97813 bp Feature: domain Description: Bac_Flav_CT_G Location: 97307-97799 bp Feature: domain Description: Bac_Flav_CT_G Location: 97307-97799 bp Feature: gene Location: 97816-99123 bp Feature: domain Description: Bac_Flav_CT_G Location: 97822-99106 bp Feature: domain Description: Bac_Flav_CT_G Location: 9782 2 -99106 bp Feature: gene Location: 167410-167562 bp Feature: gene Location: 167740-168030 bp Feature: domain Description: HTH_28 Location: 167764-167908 bp Feature: domain Description: HTH_2 8 Location: 167764-167908 bp Feature: gene Location: 168151-168348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168154-168346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168154-168346 bp Feature: gene Location: 168378-168587 bp Feature: gene Location: 168591-168953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_28 (pfam13518)

Seq: CVOZ01000032.1 Bacteroides thetaiotaomicron genome assembly 7330, contig 7330contig1.7, whole genome shotgun sequence (462757 bp)
Overview 1 RT 1: 55308-67265 bp 2 RT 2: 352111-355568 bp Neighborhood of RT #1 [55308, 67265] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Neighborhood of RT #2 [352111, 355645] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 55308-57107 bp Feature: domain Description: rpsA Location: 55377-56991 bp Feature: domain Description: rpsA Location: 553 77-56991 bp Feature: gene Location: 57276-63104 bp Feature: domain Description: DUF4011 Location: 58431-58944 bp Feature: domain Description: DUF4011 Location: 5843 1-58944 bp Feature: domain Description: DEXXQc_SF1 Location: 59283-59883 bp Feature: domain Description: DEXXQc_SF1 Location: 59283 -59883 bp Feature: domain Description: DEXXQc_SF1 Location: 60720-61470 bp Feature: domain Description: DEXXQc_SF1 Location: 60720-61470 bp Feature: domain Description: SF1_C_Upf1 Location: 61479-61992 bp Feature: domain Description: SF1_C_Upf1 Location: 61479-61992 bp Feature: domain Description: MTES_1575 Location: 62142-62430 bp Feature: domain Description: MTES_1575 Location: 62142-6243 0 bp Feature: domain Description: DUF3320 Location: 62610-62754 bp Feature: domain Description: DUF3 3 20 Location: 62610-62754 bp Feature: gene Location: 63138-64271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63462-64014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63 462-64014 bp Feature: gene Location: 64477-66663 bp Feature: gene Location: 67065-67265 bp Feature: gene Location: 352111-352455 bp Feature: gene Location: 352471-352761 bp Feature: domain Description: DUF4134 Location: 352543-352744 bp Feature: domain Description: DUF413 4 Location: 3 52543 -3 52744 bp Feature: gene Location: 353303-355114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353567-354389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 53 567-3 543 89 bp Feature: domain Description: Intron_maturas2 Location: 354578-354788 bp Feature: domain Description: Intron_maturas2 Location: 3 54578-3 54788 bp Feature: domain Description: HNHc Note: nucleases Location: 354938-355043 bp Feature: domain Description: HNHc Note: nucleases Location: 3 5493 8-3 55043 bp Feature: gene Location: 355139-355333 bp Feature: domain Description: DUF4134 Location: 355229-355319 bp Feature: domain Description: DUF413 4 Location: 3 55229-3 553 19 bp Feature: gene Location: 355349-355645 bp Feature: domain Description: DUF4133 Location: 355391-355568 bp Feature: domain Description: DUF413 3 Location: 3 553 91-3 55568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507), DUF4133 (pfam13571)

Seq: CVOZ01000037.1 Bacteroides thetaiotaomicron genome assembly 7330, contig 7330contig1.12, whole genome shotgun sequence (203390 bp)
Overview 1 RT 1: 32253-36067 bp Neighborhood of RT #1 [32253, 36213] RVT-GII GIIM RVT-GII KOG1378 Feature: gene Location: 32253-32459 bp Feature: gene Location: 32595-32852 bp Feature: gene Location: 32952-33470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32964-33204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32964 -33204 bp Feature: domain Description: GIIM Note: maturase Location: 33216-33447 bp Feature: domain Description: GIIM Note: maturase Location: 33216-334 4 7 bp Feature: gene Location: 33644-34132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33980-34118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33980-34 118 bp Feature: gene Location: 34422-34667 bp Feature: gene Location: 35017-36213 bp Feature: domain Description: KOG1378 Location: 35155-36067 bp Feature: domain Description: KOG1378 Location: 35155-36067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1378 (KOG1378, Purple acid phosphatase )

Seq: CVOZ01000044.1 Bacteroides thetaiotaomicron genome assembly 7330, contig 7330contig2.1, whole genome shotgun sequence (337167 bp)
Overview 1 RT 1: 188924-192808 bp 2 RT 2: 202523-207702 bp Neighborhood of RT #1 [188924, 192828] Avd_like RVT-DGRs YbdN Neighborhood of RT #2 [202523, 207716] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 188924-189295 bp Feature: domain Description: Avd_like Location: 188951-189254 bp Feature: domain Description: Avd_like Location: 18895 1-18925 4 bp Feature: gene Location: 189453-189869 bp Feature: gene Location: 189892-191130 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189973-190729 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189973-190729 bp Feature: gene Location: 191105-191545 bp Feature: gene Location: 191629-192828 bp Feature: domain Description: YbdN Location: 191644-192808 bp Feature: domain Description: YbdN Location: 191644-192808 bp Feature: gene Location: 202523-204550 bp Feature: domain Description: Bac_Flav_CT_G Location: 202526-204545 bp Feature: domain Description: Bac_Flav_CT_G Location: 2025 26-2045 45 bp Feature: gene Location: 204743-204949 bp Feature: gene Location: 205129-206832 bp Feature: domain Description: RVT_N Location: 205228-205471 bp Feature: domain Description: RVT_N Location: 205 228-205 471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205516-206167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 5 16-206167 bp Feature: domain Description: GIIM Note: maturase Location: 206218-206452 bp Feature: domain Description: GIIM Note: maturase Location: 206218-20645 2 bp Feature: gene Location: 206835-207437 bp Feature: domain Description: Bac_Flav_CT_G Location: 206949-207411 bp Feature: domain Description: Bac_Flav_CT_G Location: 206949-207411 bp Feature: gene Location: 207444-207716 bp Feature: domain Description: DUF3876 Location: 207471-207702 bp Feature: domain Description: DUF3876 Location: 207471-207702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)