myRT

myRT report for GCA_001050495.1_ASM105049v1

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Seq: CAHM01000025.1 Microvirga sp. JC119 WGS project CAHM00000000 data, contig 00025, whole genome shotgun sequence (33909 bp)
Overview 1 RT 1: 20391-25616 bp Neighborhood of RT #1 [20391, 25717] DUF3387 DUF3387 RVT-UG11 AcyC TolBN TPR TPR TPR Feature: gene Location: 20391-20600 bp Feature: domain Description: DUF3387 Location: 20397-20595 bp Feature: domain Description: DUF3387 Location: 20397-20595 bp Feature: gene Location: 20667-20957 bp Feature: domain Description: DUF3387 Location: 20670-20919 bp Feature: domain Description: DUF3387 Location: 20670-2091 9 bp Feature: gene Location: 21185-21919 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 21308-21749 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 21 308-21 749 bp Feature: gene Location: 22623-23045 bp Feature: gene Location: 23747-25717 bp Feature: domain Description: AcyC Location: 23768-24296 bp Feature: domain Description: AcyC Location: 23768-24296 bp Feature: domain Description: TolBN Location: 24458-24884 bp Feature: domain Description: TolBN Location: 24458-24884 bp Feature: domain Description: TPR Location: 24995-25088 bp Feature: domain Description: TPR Location: 24995-25088 bp Feature: domain Description: TPR Location: 25130-25376 bp Feature: domain Description: TPR Location: 251 30-25376 bp Feature: domain Description: TPR Location: 25421-25616 bp Feature: domain Description: TPR Location: 25421 -2561 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3387 (pfam11867), RVT-UG11, AcyC (COG2114), TolBN (COG5616), TPR (smart00028)

Seq: CAHM01000042.1 Microvirga sp. JC119 WGS project CAHM00000000 data, contig 00042, whole genome shotgun sequence (2362 bp)
Overview 1 RT 1: 1-2261 bp Neighborhood of RT #1 [1, 2359] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-246 bp Feature: gene Location: 512-2359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1571 bp Feature: domain Description: Intron_maturas2 Location: 1676-1919 bp Feature: domain Description: Intron_maturas2 Location: 1676-1919 bp Feature: domain Description: HNHc Note: nucleases Location: 2105-2261 bp Feature: domain Description: HNHc Note: nucleases Location: 2 105-2 2 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAHM01000326.1 Microvirga sp. JC119 WGS project CAHM00000000 data, contig 00330, whole genome shotgun sequence (25739 bp)
Overview 1 RT 1: 16236-20574 bp Neighborhood of RT #1 [16236, 20574] RRXRR HNH_5 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 16236-16445 bp Feature: gene Location: 16505-17797 bp Feature: domain Description: RRXRR Location: 16514-17045 bp Feature: domain Description: RRXRR Location: 16514-17045 bp Feature: domain Description: HNH_5 Location: 17102-17252 bp Feature: domain Description: HNH_5 Location: 17102-17252 bp Feature: gene Location: 18078-19922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18345-19149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 45-19149 bp Feature: domain Description: Intron_maturas2 Location: 19251-19566 bp Feature: domain Description: Intron_maturas2 Location: 19251-19566 bp Feature: domain Description: HNHc Note: nucleases Location: 19716-19857 bp Feature: domain Description: HNHc Note: nucleases Location: 19716-19857 bp Feature: gene Location: 19909-20373 bp Feature: gene Location: 20428-20574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRXRR (pfam14239), HNH_5 (pfam14279), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)