myRT

myRT report for GCA_001050595.1_ASM105059v1

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Seq: CANT01000097.1 Vibrio nigripulchritudo AM115 WGS project CANT00000000 data, contig ASP_2407_186, whole genome shotgun sequence (51424 bp)
Overview 1 RT 1: 21884-31791 bp Neighborhood of RT #1 [21884, 32129] RVT-Retrons SpoIVFB TPR Peptidase_C39A PEP_TPR_lipo TPR TPR TPR TPR TPR TPR_19 Fis1 Feature: gene Location: 21884-23539 bp Feature: gene Location: 23536-23955 bp Feature: gene Location: 23948-25798 bp Ori: CCN35485.1 Gene: ret Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24551-25166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24551 -251 66 bp Feature: gene Location: 25856-26935 bp Ori: CCN35486.1 Feature: domain Description: SpoIVFB Location: 26183-26861 bp Feature: domain Description: SpoIVFB Location: 261 83-26861 bp Feature: gene Location: 27156-32129 bp Ori: CCN35487.1 Feature: domain Description: TPR Location: 27816-28008 bp Feature: domain Description: TPR Location: 2781 6-28008 bp Feature: domain Description: Peptidase_C39A Location: 28101-28425 bp Feature: domain Description: Peptidase_C39A Location: 281 01 -28425 bp Feature: domain Description: PEP_TPR_lipo Location: 28992-29292 bp Feature: domain Description: PEP_TPR_lipo Location: 28992-29292 bp Feature: domain Description: TPR Location: 29373-29628 bp Feature: domain Description: TPR Location: 29373-29628 bp Feature: domain Description: TPR Location: 29655-29967 bp Feature: domain Description: TPR Location: 29655-29967 bp Feature: domain Description: TPR Location: 30018-30243 bp Feature: domain Description: TPR Location: 3001 8-30243 bp Feature: domain Description: TPR Location: 30270-30492 bp Feature: domain Description: TPR Location: 30270-30492 bp Feature: domain Description: TPR Location: 30594-30873 bp Feature: domain Description: TPR Location: 30594-30873 bp Feature: domain Description: TPR_19 Location: 31023-31140 bp Feature: domain Description: TPR_1 9 Location: 31 023-31 1 40 bp Feature: domain Description: Fis1 Location: 31698-31791 bp Feature: domain Description: Fis1 Location: 31 698-31 791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SpoIVFB (COG1994), TPR (smart00028), Peptidase_C39A (cd02549), PEP_TPR_lipo (TIGR02917), TPR_19 (pfam14559), Fis1 (cl21750)

Seq: CANT01000066.1 Vibrio nigripulchritudo AM115 WGS project CANT00000000 data, contig ASP_2407_158, whole genome shotgun sequence (35571 bp)
Overview 1 RT 1: 19883-24862 bp Neighborhood of RT #1 [19883, 24867] CIA30 AAA_15 AAA_15 RVT-Retrons COG3530 Feature: gene Location: 19883-20365 bp Ori: CCN34705.1 Feature: domain Description: CIA30 Location: 19889-20345 bp Feature: domain Description: CIA30 Location: 19889-2 0345 bp Feature: gene Location: 21128-22480 bp Ori: CCN34706.1 Feature: domain Description: AAA_15 Location: 21161-21341 bp Feature: domain Description: AAA_15 Location: 2 1161-2 1341 bp Feature: domain Description: AAA_15 Location: 21479-21869 bp Feature: domain Description: AAA_15 Location: 2 1479-2 1869 bp Feature: gene Location: 22480-23427 bp Ori: CCN34707.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22594-23146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 594-2 3146 bp Feature: gene Location: 24370-24612 bp Feature: gene Location: 24652-24867 bp Ori: CCN34709.1 Feature: domain Description: COG3530 Location: 24658-24862 bp Feature: domain Description: COG3530 Location: 2 4658-2 4862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CIA30 (pfam08547), AAA_15 (pfam13175), RVT-Retrons, COG3530 (Uncharacterized conserved protein, DUF3820 family )

Seq: CANT01000061.1 Vibrio nigripulchritudo AM115 WGS project CANT00000000 data, contig ASP_2407_153, whole genome shotgun sequence (100148 bp)
Overview 1 RT 1: 93192-99156 bp Neighborhood of RT #1 [93192, 99164] TIGR02646 SLR COG3950 COG3950 RVT-Retrons YpwA RhtB Feature: gene Location: 93192-93980 bp Ori: CCN34644.1 Feature: domain Description: TIGR02646 Location: 93264-93798 bp Feature: domain Description: TIGR02646 Location: 93 264-93 798 bp Feature: gene Location: 93964-95592 bp Ori: CCN34645.1 Feature: domain Description: SLR Location: 94009-94129 bp Feature: domain Description: SLR Location: 94009-94129 bp Feature: domain Description: COG3950 Location: 94153-94786 bp Feature: domain Description: COG3 950 Location: 94153 -94786 bp Feature: domain Description: COG3950 Location: 94987-95560 bp Feature: domain Description: COG3 950 Location: 94987-95560 bp Feature: gene Location: 95594-96532 bp Ori: CCN34646.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95693-96290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95693 -96290 bp Feature: gene Location: 96867-98348 bp Gene: mcar Feature: domain Description: YpwA Location: 96876-98346 bp Feature: domain Description: YpwA Location: 96876-983 46 bp Feature: gene Location: 98532-99164 bp Ori: CCN34648.1 Feature: domain Description: RhtB Location: 98535-99156 bp Feature: domain Description: RhtB Location: 9853 5-99156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), SLR (sd00010), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, YpwA (COG2317), RhtB (COG1280)