myRT

myRT report for GCA_001050655.1_ASM105065v1

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Seq: CANW01000017.1 Vibrio nigripulchritudo FTn2 WGS project CANW00000000 data, contig ASP_2413_113, whole genome shotgun sequence (35571 bp)
Overview 1 RT 1: 10705-15669 bp Neighborhood of RT #1 [10705, 15689] COG3530 RVT-Retrons AAA_15 AAA_15 CIA30 Feature: gene Location: 10705-10920 bp Ori: CCN39789.1 Feature: domain Description: COG3530 Location: 10711-10915 bp Feature: domain Description: COG3530 Location: 1 071 1 -1 091 5 bp Feature: gene Location: 10960-11202 bp Feature: gene Location: 12145-13092 bp Ori: CCN39791.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12259-12811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2259-1 281 1 bp Feature: gene Location: 13092-14444 bp Ori: CCN39792.1 Feature: domain Description: AAA_15 Location: 13125-13305 bp Feature: domain Description: AAA_1 5 Location: 1 31 25-1 3305 bp Feature: domain Description: AAA_15 Location: 13443-13833 bp Feature: domain Description: AAA_1 5 Location: 1 3443-1 3833 bp Feature: gene Location: 15207-15689 bp Ori: CCN39793.1 Feature: domain Description: CIA30 Location: 15213-15669 bp Feature: domain Description: CIA30 Location: 1 521 3-1 5669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3530 (Uncharacterized conserved protein, DUF3820 family ), RVT-Retrons, AAA_15 (pfam13175), CIA30 (pfam08547)

Seq: CANW01000040.1 Vibrio nigripulchritudo FTn2 WGS project CANW00000000 data, contig ASP_2413_134, whole genome shotgun sequence (100168 bp)
Overview 1 RT 1: 979-6769 bp Neighborhood of RT #1 [979, 6951] RhtB YpwA RVT-Retrons SLR COG3950 COG3950 TIGR02646 Feature: gene Location: 979-1611 bp Ori: CCN40540.1 Feature: domain Description: RhtB Location: 982-1603 bp Feature: domain Description: RhtB Location: 982 -1603 bp Feature: gene Location: 1795-3276 bp Gene: mcar Feature: domain Description: YpwA Location: 1804-3274 bp Feature: domain Description: YpwA Location: 1804-32 74 bp Feature: gene Location: 3611-4549 bp Ori: CCN40542.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3710-4307 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3710-4307 bp Feature: gene Location: 4551-6179 bp Ori: CCN40543.1 Feature: domain Description: SLR Location: 4596-4716 bp Feature: domain Description: SLR Location: 4596-4716 bp Feature: domain Description: COG3950 Location: 4740-5373 bp Feature: domain Description: COG3950 Location: 4740-5373 bp Feature: domain Description: COG3950 Location: 5574-6147 bp Feature: domain Description: COG3950 Location: 5574-6147 bp Feature: gene Location: 6163-6951 bp Ori: CCN40544.1 Feature: domain Description: TIGR02646 Location: 6235-6769 bp Feature: domain Description: TIGR02 646 Location: 62 35-6769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhtB (COG1280), YpwA (COG2317), RVT-Retrons, SLR (sd00010), COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: CANW01000006.1 Vibrio nigripulchritudo FTn2 WGS project CANW00000000 data, contig ASP_2413_103, whole genome shotgun sequence (51424 bp)
Overview 1 RT 1: 19296-29541 bp Neighborhood of RT #1 [19296, 29541] TPR Peptidase_C39A PEP_TPR_lipo TPR TPR TPR TPR TPR TPR_19 Fis1 SpoIVFB RVT-Retrons Feature: gene Location: 19296-24269 bp Ori: CCN39326.1 Feature: domain Description: TPR Location: 19956-20148 bp Feature: domain Description: TPR Location: 19956-20148 bp Feature: domain Description: Peptidase_C39A Location: 20241-20565 bp Feature: domain Description: Peptidase_C3 9A Location: 20241-20565 bp Feature: domain Description: PEP_TPR_lipo Location: 21132-21432 bp Feature: domain Description: PEP_TPR_lipo Location: 2113 2-2143 2 bp Feature: domain Description: TPR Location: 21513-21768 bp Feature: domain Description: TPR Location: 21513 -21768 bp Feature: domain Description: TPR Location: 21795-22107 bp Feature: domain Description: TPR Location: 21795-22107 bp Feature: domain Description: TPR Location: 22158-22383 bp Feature: domain Description: TPR Location: 22158-223 83 bp Feature: domain Description: TPR Location: 22410-22632 bp Feature: domain Description: TPR Location: 22410-2263 2 bp Feature: domain Description: TPR Location: 22734-23013 bp Feature: domain Description: TPR Location: 2273 4-23 013 bp Feature: domain Description: TPR_19 Location: 23163-23280 bp Feature: domain Description: TPR_19 Location: 23 163 -23 280 bp Feature: domain Description: Fis1 Location: 23838-23931 bp Feature: domain Description: Fis1 Location: 23 83 8-23 93 1 bp Feature: gene Location: 24490-25569 bp Ori: CCN39327.1 Feature: domain Description: SpoIVFB Location: 24817-25495 bp Feature: domain Description: SpoIVFB Location: 24817-25495 bp Feature: gene Location: 25627-27477 bp Ori: CCN39328.1 Gene: ret Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26230-26845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2623 0-26845 bp Feature: gene Location: 27470-27889 bp Feature: gene Location: 27886-29541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), Peptidase_C39A (cd02549), PEP_TPR_lipo (TIGR02917), TPR_19 (pfam14559), Fis1 (cl21750), SpoIVFB (COG1994), RVT-Retrons