myRT

myRT report for GCA_001050675.1_ASM105067v1

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Seq: CAOA01000134.1 Vibrio nigripulchritudo Pon4 WGS project CAOA00000000 data, contig ASP_2038_85, whole genome shotgun sequence (35571 bp)
Overview 1 RT 1: 10705-15669 bp Neighborhood of RT #1 [10705, 15689] COG3530 RVT-Retrons AAA_15 AAA_15 CIA30 Feature: gene Location: 10705-10920 bp Ori: CCN67689.1 Feature: domain Description: COG3530 Location: 10711-10915 bp Feature: domain Description: COG3530 Location: 1 071 1 -1 091 5 bp Feature: gene Location: 10960-11202 bp Feature: gene Location: 12145-13092 bp Ori: CCN67691.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12259-12811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2259-1 281 1 bp Feature: gene Location: 13092-14444 bp Ori: CCN67692.1 Feature: domain Description: AAA_15 Location: 13125-13305 bp Feature: domain Description: AAA_1 5 Location: 1 31 25-1 3305 bp Feature: domain Description: AAA_15 Location: 13443-13833 bp Feature: domain Description: AAA_1 5 Location: 1 3443-1 3833 bp Feature: gene Location: 15207-15689 bp Ori: CCN67693.1 Feature: domain Description: CIA30 Location: 15213-15669 bp Feature: domain Description: CIA30 Location: 1 521 3-1 5669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3530 (Uncharacterized conserved protein, DUF3820 family ), RVT-Retrons, AAA_15 (pfam13175), CIA30 (pfam08547)

Seq: CAOA01000064.1 Vibrio nigripulchritudo Pon4 WGS project CAOA00000000 data, contig ASP_2038_21, whole genome shotgun sequence (51424 bp)
Overview 1 RT 1: 19296-29541 bp Neighborhood of RT #1 [19296, 29541] TPR Peptidase_C39A PEP_TPR_lipo TPR TPR TPR TPR TPR TPR_19 Fis1 SpoIVFB RVT-Retrons Feature: gene Location: 19296-24269 bp Ori: CCN64370.1 Feature: domain Description: TPR Location: 19956-20148 bp Feature: domain Description: TPR Location: 19956-2 0148 bp Feature: domain Description: Peptidase_C39A Location: 20241-20565 bp Feature: domain Description: Peptidase_C39A Location: 2 02 41-2 0565 bp Feature: domain Description: PEP_TPR_lipo Location: 21132-21432 bp Feature: domain Description: PEP_TPR_lipo Location: 2 1132 -2 1432 bp Feature: domain Description: TPR Location: 21513-21768 bp Feature: domain Description: TPR Location: 2 1513-2 1768 bp Feature: domain Description: TPR Location: 21795-22107 bp Feature: domain Description: TPR Location: 2 1795-2 2 107 bp Feature: domain Description: TPR Location: 22158-22383 bp Feature: domain Description: TPR Location: 2 2 158-2 2 383 bp Feature: domain Description: TPR Location: 22410-22632 bp Feature: domain Description: TPR Location: 2 2 410-2 2 632 bp Feature: domain Description: TPR Location: 22734-23013 bp Feature: domain Description: TPR Location: 2 2 734-2 3013 bp Feature: domain Description: TPR_19 Location: 23163-23280 bp Feature: domain Description: TPR_19 Location: 2 3163-2 32 80 bp Feature: domain Description: Fis1 Location: 23838-23931 bp Feature: domain Description: Fis1 Location: 2 3838-2 3931 bp Feature: gene Location: 24490-25569 bp Ori: CCN64371.1 Feature: domain Description: SpoIVFB Location: 24817-25495 bp Feature: domain Description: SpoIVFB Location: 2 4817-2 5495 bp Feature: gene Location: 25627-27477 bp Ori: CCN64372.1 Gene: ret Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26230-26845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 62 30-2 6845 bp Feature: gene Location: 27470-27889 bp Feature: gene Location: 27886-29541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), Peptidase_C39A (cd02549), PEP_TPR_lipo (TIGR02917), TPR_19 (pfam14559), Fis1 (cl21750), SpoIVFB (COG1994), RVT-Retrons

Seq: CAOA01000025.1 Vibrio nigripulchritudo Pon4 WGS project CAOA00000000 data, contig ASP_2038_120, whole genome shotgun sequence (8644 bp)
Overview 1 RT 1: 1695-7659 bp Neighborhood of RT #1 [1695, 7667] TIGR02646 SLR COG3950 COG3950 RVT-Retrons YpwA RhtB Feature: gene Location: 1695-2483 bp Ori: CCN63331.1 Feature: domain Description: TIGR02646 Location: 1767-2301 bp Feature: domain Description: TIGR02646 Location: 1767-23 01 bp Feature: gene Location: 2467-4095 bp Ori: CCN63332.1 Feature: domain Description: SLR Location: 2512-2632 bp Feature: domain Description: SLR Location: 2512-263 2 bp Feature: domain Description: COG3950 Location: 2656-3289 bp Feature: domain Description: COG3 950 Location: 2656-3 289 bp Feature: domain Description: COG3950 Location: 3490-4063 bp Feature: domain Description: COG3 950 Location: 3 490-4063 bp Feature: gene Location: 4097-5035 bp Ori: CCN63333.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4196-4793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4196-4793 bp Feature: gene Location: 5370-6851 bp Gene: mcar Feature: domain Description: YpwA Location: 5379-6849 bp Feature: domain Description: YpwA Location: 53 79-6849 bp Feature: gene Location: 7035-7667 bp Ori: CCN63335.1 Feature: domain Description: RhtB Location: 7038-7659 bp Feature: domain Description: RhtB Location: 703 8-7659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), SLR (sd00010), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, YpwA (COG2317), RhtB (COG1280)