myRT

myRT report for GCA_001051345.1_PAMH19

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Seq: CDAZ01000004.1 Pseudomonas aeruginosa genome assembly PAMH19, contig MH19_contig4, whole genome shotgun sequence (948949 bp)
Overview 1 RT 1: 72926-80923 bp Neighborhood of RT #1 [72926, 80940] ABC_phnC RVT-GII GIIM CHD CHD COG4271 Feature: gene Location: 72926-73753 bp Ori: CEI03278.1 Gene: ptxA Feature: domain Description: ABC_phnC Location: 72956-73670 bp Feature: domain Description: ABC_phnC Location: 72956-73670 bp Feature: gene Location: 74466-74633 bp Feature: gene Location: 75135-76394 bp Ori: CEI03292.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75339-75996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75339-75996 bp Feature: domain Description: GIIM Note: maturase Location: 76074-76296 bp Feature: domain Description: GIIM Note: maturase Location: 76074-76296 bp Feature: gene Location: 78389-79933 bp Ori: CEI03298.1 Feature: domain Description: CHD Location: 78605-79019 bp Feature: domain Description: CHD Location: 78605-7901 9 bp Feature: domain Description: CHD Location: 79247-79736 bp Feature: domain Description: CHD Location: 79247-79736 bp Feature: gene Location: 80014-80940 bp Ori: CEI03303.1 Feature: domain Description: COG4271 Location: 80254-80923 bp Feature: domain Description: COG4271 Location: 80254-80923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), RVT-GII, GIIM (pfam08388), CHD (cd07302), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain )

Seq: CDAZ01000013.1 Pseudomonas aeruginosa genome assembly PAMH19, contig MH19_contig13, whole genome shotgun sequence (754973 bp)
Overview 1 RT 1: 116364-122129 bp Neighborhood of RT #1 [116364, 122224] DEXHc_Snf DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF conj_PilL Feature: gene Location: 116364-116669 bp Feature: gene Location: 116780-117994 bp Ori: CEI17356.1 Feature: domain Description: DEXHc_Snf Location: 116993-117248 bp Feature: domain Description: DEXHc_Snf Location: 116993-1172 48 bp Feature: domain Description: DEXHc_Snf Location: 117809-117947 bp Feature: domain Description: DEXHc_Snf Location: 117809-117947 bp Feature: gene Location: 118591-120294 bp Ori: CEI17359.1 Feature: domain Description: RVT_N Location: 118648-118891 bp Feature: domain Description: RVT_N Location: 118648-118891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118936-119572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118936-119572 bp Feature: domain Description: GIIM Note: maturase Location: 119626-119857 bp Feature: domain Description: GIIM Note: maturase Location: 11962 6-119857 bp Feature: domain Description: HNHc Note: nucleases Location: 120091-120247 bp Feature: domain Description: HNHc Note: nucleases Location: 12 0091-12 02 47 bp Feature: gene Location: 120407-121456 bp Ori: CEI17362.1 Feature: domain Description: SF2_C_SNF Location: 120890-121292 bp Feature: domain Description: SF2 _C_SNF Location: 12 0890-12 12 92 bp Feature: gene Location: 121655-122224 bp Ori: CEI17365.1 Feature: domain Description: conj_PilL Location: 121826-122129 bp Feature: domain Description: conj_PilL Location: 12 182 6-12 2 12 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)

Seq: CDAZ01000031.1 Pseudomonas aeruginosa genome assembly PAMH19, contig MH19_contig31, whole genome shotgun sequence (324034 bp)
Overview 1 RT 1: 71046-76909 bp Neighborhood of RT #1 [71046, 76953] DEXHc_Snf DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF resist_ArsH Feature: gene Location: 71046-71351 bp Feature: gene Location: 71489-72709 bp Ori: CEI21622.1 Feature: domain Description: DEXHc_Snf Location: 71708-71966 bp Feature: domain Description: DEXHc_Snf Location: 71708-71966 bp Feature: domain Description: DEXHc_Snf Location: 72530-72662 bp Feature: domain Description: DEXHc_Snf Location: 7253 0-72662 bp Feature: gene Location: 73306-75009 bp Ori: CEI21623.1 Feature: domain Description: RVT_N Location: 73363-73606 bp Feature: domain Description: RVT_N Location: 73 3 63 -73 606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73651-74287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 651-74287 bp Feature: domain Description: GIIM Note: maturase Location: 74341-74572 bp Feature: domain Description: GIIM Note: maturase Location: 743 41-74572 bp Feature: domain Description: HNHc Note: nucleases Location: 74806-74962 bp Feature: domain Description: HNHc Note: nucleases Location: 74806-74962 bp Feature: gene Location: 75122-76171 bp Ori: CEI21624.1 Feature: domain Description: SF2_C_SNF Location: 75611-76007 bp Feature: domain Description: SF2_C_SNF Location: 75611-76007 bp Feature: gene Location: 76231-76953 bp Ori: CEI21625.1 Gene: arsH1 Feature: domain Description: resist_ArsH Location: 76255-76909 bp Feature: domain Description: resist_ArsH Location: 76255-76909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), resist_ArsH (TIGR02690)

Seq: CDAZ01000016.1 Pseudomonas aeruginosa genome assembly PAMH19, contig MH19_contig16, whole genome shotgun sequence (60451 bp)
Overview 1 RT 1: 9383-16614 bp Neighborhood of RT #1 [9383, 16778] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 9383-11869 bp Ori: CEI19319.1 Feature: domain Description: STN Location: 9587-9740 bp Feature: domain Description: STN Location: 9587-974 0 bp Feature: domain Description: TonB-siderophor Location: 9848-11807 bp Feature: domain Description: TonB-siderophor Location: 984 8-11807 bp Feature: gene Location: 12030-12866 bp Ori: CEI19321.1 Feature: domain Description: YHI9 Location: 12042-12858 bp Feature: domain Description: YHI9 Location: 1204 2-12858 bp Feature: gene Location: 13050-14339 bp Ori: CEI19323.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13242-14028 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1324 2-14 028 bp Feature: gene Location: 14895-16163 bp Ori: CEI19325.1 Gene: fabF3 Feature: domain Description: PRK06333 Location: 14901-16158 bp Feature: domain Description: PRK06333 Location: 14 901-16158 bp Feature: gene Location: 16272-16778 bp Ori: CEI19327.1 Feature: domain Description: HxlR Location: 16296-16614 bp Feature: domain Description: HxlR Location: 16296-16614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)