myRT

myRT report for GCA_001051685.1_CFSAN000863_1.0

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Seq: APHA01000059.1 Salmonella enterica subsp. enterica serovar Newport str. DC_10-449 SEEN0449_1, whole genome shotgun sequence (529917 bp)
Overview 1 RT 1: 440055-446502 bp Neighborhood of RT #1 [440055, 446609] DUF1889 Tra5 RVT-UG8 PRK09678 Feature: gene Location: 440055-440354 bp Ori: KMU18073.1 Feature: domain Description: DUF1889 Location: 440058-440352 bp Feature: domain Description: DUF1 889 Location: 440058-440352 bp Feature: gene Location: 441120-441983 bp Ori: KMU18074.1 Feature: domain Description: Tra5 Location: 441273-441978 bp Feature: domain Description: Tra5 Location: 441 273-441 978 bp Feature: gene Location: 442663-444681 bp Ori: KMU18075.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 443236-443689 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 443236-443689 bp Feature: gene Location: 444672-445307 bp Feature: gene Location: 446337-446609 bp Ori: KMU18077.1 Feature: domain Description: PRK09678 Location: 446346-446502 bp Feature: domain Description: PRK09678 Location: 446346-446502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1889 (pfam08986), Tra5 (COG2801), RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: APHA01000031.1 Salmonella enterica subsp. enterica serovar Newport str. DC_10-449 SEEN0449_21, whole genome shotgun sequence (80733 bp)
Overview 1 RT 1: 44810-51648 bp Neighborhood of RT #1 [44810, 51650] PRK10473 RVT-Retrons INT_P4_C trmE Feature: gene Location: 44810-45997 bp Ori: KMU23422.1 Feature: domain Description: PRK10473 Location: 44813-45989 bp Feature: domain Description: PRK10473 Location: 44813-45989 bp Feature: gene Location: 46977-47846 bp Feature: gene Location: 48172-49104 bp Ori: KMU23424.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48328-48871 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4832 8-48871 bp Feature: gene Location: 49186-49608 bp Ori: KMU23425.1 Feature: domain Description: INT_P4_C Location: 49192-49540 bp Feature: domain Description: INT_P4_C Location: 49192 -49540 bp Feature: gene Location: 50286-51650 bp Ori: KMU23426.1 Gene: trmE Feature: domain Description: trmE Location: 50289-51648 bp Feature: domain Description: trmE Location: 502 89-51648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, INT_P4_C (cd00801), trmE (PRK05291)