myRT

myRT report for GCA_001052405.1_ASM105240v1

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Seq: JVZB01000256.1 Enterococcus faecium strain 1201_EFCM 1123_25067_539801, whole genome shotgun sequence (25067 bp)
Overview 1 RT 1: 17016-22863 bp Neighborhood of RT #1 [17016, 22982] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 17016-18710 bp Feature: domain Description: VirB4 Location: 17334-18018 bp Feature: domain Description: VirB4 Location: 1 7334-1 801 8 bp Feature: gene Location: 18978-19211 bp Feature: gene Location: 19398-21275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19713-20451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 971 3-20451 bp Feature: domain Description: HNHc Note: nucleases Location: 21009-21162 bp Feature: domain Description: HNHc Note: nucleases Location: 21 009-21 1 62 bp Feature: gene Location: 21463-21783 bp Feature: gene Location: 21783-22982 bp Feature: domain Description: Glucosaminidase Location: 22053-22449 bp Feature: domain Description: Glucosaminidase Location: 22053-22449 bp Feature: domain Description: Peptidase_M23 Location: 22626-22863 bp Feature: domain Description: Peptidase_M23 Location: 22626-22863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: JVZB01000262.1 Enterococcus faecium strain 1201_EFCM 1145_4595_77299, whole genome shotgun sequence (4595 bp)
Overview 1 RT 1: 3-4586 bp Neighborhood of RT #1 [3, 4594] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 3-269 bp Feature: domain Description: Dcm Location: 6-267 bp Feature: domain Description: Dcm Location: 6-2 67 bp Feature: gene Location: 314-694 bp Feature: domain Description: FtsK Location: 329-569 bp Feature: domain Description: FtsK Location: 32 9-569 bp Feature: gene Location: 796-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162-1858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162 -1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2398-2557 bp Feature: domain Description: HNHc Note: nucleases Location: 2 398-2 557 bp Feature: gene Location: 3264-4295 bp Feature: domain Description: FtsK_SpoIIIE Location: 3936-4176 bp Feature: domain Description: FtsK_SpoIIIE Location: 3936-4176 bp Feature: gene Location: 4349-4594 bp Feature: domain Description: RelB_DinJ Location: 4460-4586 bp Feature: domain Description: RelB_DinJ Location: 4460-4586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: JVZB01000339.1 Enterococcus faecium strain 1201_EFCM 1402_4876_136432_1090+,...,1216_, whole genome shotgun sequence (4876 bp)
Overview 1 RT 1: 93-4318 bp Neighborhood of RT #1 [93, 4395] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 93-245 bp Feature: gene Location: 421-2331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1492 bp Feature: domain Description: HNHc Note: nucleases Location: 2047-2212 bp Feature: domain Description: HNHc Note: nucleases Location: 2047-2212 bp Feature: gene Location: 2840-2989 bp Feature: gene Location: 3211-4395 bp Feature: domain Description: HTH_XRE Location: 3241-3385 bp Feature: domain Description: HTH_XRE Location: 3 241-3 3 85 bp Feature: domain Description: Rol_Rep_N Location: 3418-3682 bp Feature: domain Description: Rol_Rep_N Location: 3 418-3 682 bp Feature: domain Description: Rep_trans Location: 3706-4318 bp Feature: domain Description: Rep_trans Location: 3 706-43 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVZB01000355.1 Enterococcus faecium strain 1201_EFCM 1419_38533_517888_989_,367+,644+, whole genome shotgun sequence (38533 bp)
Overview 1 RT 1: 23917-29778 bp Neighborhood of RT #1 [23917, 29789] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 23917-24645 bp Feature: domain Description: PRK09362 Location: 23920-24622 bp Feature: domain Description: PRK09362 Location: 23920-24 622 bp Feature: gene Location: 24901-25278 bp Feature: gene Location: 25847-27235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26168-26783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26168-26783 bp Feature: domain Description: GIIM Note: maturase Location: 26840-27056 bp Feature: domain Description: GIIM Note: maturase Location: 2684 0-27056 bp Feature: gene Location: 27357-28652 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27369-28638 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27369-28638 bp Feature: gene Location: 28665-29789 bp Feature: domain Description: PRK06019 Location: 28689-29778 bp Feature: domain Description: PRK06019 Location: 28689-29778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)

Seq: JVZB01000358.1 Enterococcus faecium strain 1201_EFCM 1422_4246_1243287_994_,...,129+, whole genome shotgun sequence (4322 bp)
Overview 1 RT 1: 667-4290 bp Neighborhood of RT #1 [667, 4319] RVT-AbiP2 HsdM Rve Feature: gene Location: 667-2142 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1015-1480 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1015 -1480 bp Feature: gene Location: 2480-3958 bp Feature: domain Description: HsdM Location: 2501-3926 bp Feature: domain Description: HsdM Location: 25 01-3926 bp Feature: gene Location: 3981-4319 bp Feature: domain Description: Rve Location: 3984-4290 bp Feature: domain Description: Rve Location: 3984-4290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286), Rve (COG3316)