myRT

myRT report for GCA_001052485.1_ASM105248v1

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Seq: JVXT01000282.1 Enterococcus faecium strain 1232_EFCM 1033_3472_711835_804+,...,327+, whole genome shotgun sequence (3472 bp)
Overview 1 RT 1: 26-3471 bp Neighborhood of RT #1 [26, 3471] RVT-AbiP2 HsdM Feature: gene Location: 26-1501 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 374-839 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 374-839 bp Feature: gene Location: 1839-3317 bp Feature: domain Description: HsdM Location: 1860-3285 bp Feature: domain Description: HsdM Location: 1 860-3285 bp Feature: gene Location: 3340-3471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: JVXT01000050.1 Enterococcus faecium strain 1232_EFCM 202_4805_84760, whole genome shotgun sequence (4805 bp)
Overview 1 RT 1: 18-4796 bp Neighborhood of RT #1 [18, 4804] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm Feature: gene Location: 18-260 bp Feature: domain Description: RelB_DinJ Location: 126-252 bp Feature: domain Description: RelB_DinJ Location: 12 6-2 52 bp Feature: gene Location: 329-1345 bp Feature: domain Description: FtsK_SpoIIIE Location: 986-1226 bp Feature: domain Description: FtsK_SpoIIIE Location: 986-12 2 6 bp Feature: gene Location: 1939-3813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2305-3001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 305-3001 bp Feature: domain Description: HNHc Note: nucleases Location: 3541-3700 bp Feature: domain Description: HNHc Note: nucleases Location: 3541-3700 bp Feature: gene Location: 3915-4295 bp Feature: domain Description: FtsK Location: 3930-4170 bp Feature: domain Description: FtsK Location: 3930-4170 bp Feature: gene Location: 4340-4804 bp Feature: domain Description: Dcm Location: 4343-4796 bp Feature: domain Description: Dcm Location: 4343-4796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270)

Seq: JVXT01000058.1 Enterococcus faecium strain 1232_EFCM 215_25093_686804, whole genome shotgun sequence (25093 bp)
Overview 1 RT 1: 2099-7373 bp Neighborhood of RT #1 [2099, 8065] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 2099-3298 bp Feature: domain Description: Glucosaminidase Location: 2369-2765 bp Feature: domain Description: Glucosaminidase Location: 23 69-2765 bp Feature: domain Description: Peptidase_M23 Location: 2942-3179 bp Feature: domain Description: Peptidase_M23 Location: 2942-3 179 bp Feature: gene Location: 3298-3618 bp Feature: gene Location: 3806-5683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4121-4859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4121-4859 bp Feature: domain Description: HNHc Note: nucleases Location: 5417-5570 bp Feature: domain Description: HNHc Note: nucleases Location: 5417-5570 bp Feature: gene Location: 5870-6103 bp Feature: gene Location: 6371-8065 bp Feature: domain Description: VirB4 Location: 6689-7373 bp Feature: domain Description: VirB4 Location: 6689-73 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: JVXT01000122.1 Enterococcus faecium strain 1232_EFCM 507_42704_662876, whole genome shotgun sequence (42704 bp)
Overview 1 RT 1: 12903-18752 bp Neighborhood of RT #1 [12903, 18775] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 12903-14027 bp Feature: domain Description: PRK06019 Location: 12927-14016 bp Feature: domain Description: PRK06019 Location: 12927-14 016 bp Feature: gene Location: 14040-15335 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 14052-15321 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 14 052-15321 bp Feature: gene Location: 15457-16845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15778-16393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15778-16393 bp Feature: domain Description: GIIM Note: maturase Location: 16450-16666 bp Feature: domain Description: GIIM Note: maturase Location: 164 50-16666 bp Feature: gene Location: 17414-17791 bp Feature: gene Location: 18047-18775 bp Feature: domain Description: PRK09362 Location: 18050-18752 bp Feature: domain Description: PRK09362 Location: 18050-18752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)

Seq: JVXT01000247.1 Enterococcus faecium strain 1232_EFCM 995_4638_144487_427_,...,564+, whole genome shotgun sequence (4638 bp)
Overview 1 RT 1: 244-4546 bp Neighborhood of RT #1 [244, 4546] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 244-1428 bp Feature: domain Description: HTH_XRE Location: 274-418 bp Feature: domain Description: HTH_XRE Location: 274-418 bp Feature: domain Description: Rol_Rep_N Location: 451-715 bp Feature: domain Description: Rol_Rep_N Location: 45 1-715 bp Feature: domain Description: Rep_trans Location: 739-1351 bp Feature: domain Description: Rep_trans Location: 739-135 1 bp Feature: gene Location: 2308-4218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641-3379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641-3379 bp Feature: domain Description: HNHc Note: nucleases Location: 3934-4099 bp Feature: domain Description: HNHc Note: nucleases Location: 3934-4099 bp Feature: gene Location: 4406-4546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)