myRT

myRT report for GCA_001052525.1_ASM105252v1

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Seq: JVXE01000044.1 Klebsiella michiganensis strain 1246_KOXY 164_50655_551070, whole genome shotgun sequence (50655 bp)
Overview 1 RT 1: 27367-31139 bp Neighborhood of RT #1 [27367, 31139] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 27367-27546 bp Feature: gene Location: 27613-27951 bp Feature: gene Location: 28260-29957 bp Feature: domain Description: RVT_N Location: 28314-28554 bp Feature: domain Description: RVT_N Location: 2831 4-28554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28602-29241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28602-29241 bp Feature: domain Description: GIIM Note: maturase Location: 29298-29529 bp Feature: domain Description: GIIM Note: maturase Location: 29298-29529 bp Feature: domain Description: HNHc Note: nucleases Location: 29757-29910 bp Feature: domain Description: HNHc Note: nucleases Location: 29757-2991 0 bp Feature: gene Location: 30387-30812 bp Feature: gene Location: 30921-31139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JVXE01000238.1 Klebsiella michiganensis strain 1246_KOXY 975_161750_2087576_46+,...,930_, whole genome shotgun sequence (161750 bp)
Overview 1 RT 1: 87743-92845 bp 2 RT 2: 94902-104664 bp Neighborhood of RT #1 [87743, 92847] RuMP_HxlA SLATT_5 RVT-UG17 MviM SrlE Neighborhood of RT #2 [94902, 104702] COG5519 AlpA AE_Prim_S_like RVT-UG10 PRK09692 Feature: gene Location: 87743-88378 bp Feature: domain Description: RuMP_HxlA Location: 87749-88361 bp Feature: domain Description: RuMP_HxlA Location: 87749-88361 bp Feature: gene Location: 88742-89281 bp Feature: domain Description: SLATT_5 Location: 88748-89261 bp Feature: domain Description: SLATT_5 Location: 88748-892 61 bp Feature: gene Location: 89271-90641 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 89499-90105 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 89499-90105 bp Feature: gene Location: 90834-91859 bp Feature: domain Description: MviM Location: 90840-91839 bp Feature: domain Description: MviM Location: 90840-91839 bp Feature: gene Location: 91867-92847 bp Feature: domain Description: SrlE Location: 91870-92845 bp Feature: domain Description: SrlE Location: 91870-92 845 bp Feature: gene Location: 94902-96971 bp Feature: domain Description: COG5519 Location: 95271-96966 bp Feature: domain Description: COG5519 Location: 952 71-96966 bp Feature: gene Location: 97007-97222 bp Feature: domain Description: AlpA Location: 97025-97220 bp Feature: domain Description: AlpA Location: 9702 5-972 2 0 bp Feature: gene Location: 97983-103337 bp Feature: domain Description: AE_Prim_S_like Location: 98067-98541 bp Feature: domain Description: AE_Prim_S_like Location: 98067-98541 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 99315-99978 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 99315-99978 bp Feature: gene Location: 103595-104242 bp Feature: gene Location: 104244-104702 bp Feature: domain Description: PRK09692 Location: 104253-104664 bp Feature: domain Description: PRK09692 Location: 1042 53-104664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RuMP_HxlA (TIGR03128), SLATT_5 (pfam18160), RVT-UG17, MviM (COG0673), SrlE (COG3732), COG5519 (Uncharcterized protein, DUF927 family ), AlpA (COG3311), AE_Prim_S_like (cl01287), RVT-UG10, PRK09692 (Integrase; provisional)