myRT

myRT report for GCA_001053045.1_ASM105304v1

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Seq: JVYL01000249.1 Enterococcus faecium strain 1216.rep1_EFCM 1056_46849_1101415_632+,...,1012_, whole genome shotgun sequence (46849 bp)
Overview 1 RT 1: 41791-46846 bp Neighborhood of RT #1 [41791, 46846] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 41791-42291 bp Feature: domain Description: ArdA Location: 41809-42280 bp Feature: domain Description: ArdA Location: 41 809-42280 bp Feature: gene Location: 42304-42456 bp Feature: gene Location: 42632-44542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42965-43703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42965-43703 bp Feature: domain Description: HNHc Note: nucleases Location: 44258-44423 bp Feature: domain Description: HNHc Note: nucleases Location: 44258-44423 bp Feature: gene Location: 45422-46606 bp Feature: domain Description: HTH_XRE Location: 45452-45596 bp Feature: domain Description: HTH_XRE Location: 45452-45596 bp Feature: domain Description: Rol_Rep_N Location: 45629-45893 bp Feature: domain Description: Rol_Rep_N Location: 45629-45893 bp Feature: domain Description: Rep_trans Location: 45917-46529 bp Feature: domain Description: Rep_trans Location: 4591 7-46529 bp Feature: gene Location: 46718-46846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JVYL01000253.1 Enterococcus faecium strain 1216.rep1_EFCM 1060_21258_600112_667+,...,596_, whole genome shotgun sequence (21258 bp)
Overview 1 RT 1: 2-4882 bp Neighborhood of RT #1 [2, 4890] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 2-466 bp Feature: domain Description: Dcm Location: 5-458 bp Feature: domain Description: Dcm Location: 5-458 bp Feature: gene Location: 511-891 bp Feature: domain Description: FtsK Location: 526-766 bp Feature: domain Description: FtsK Location: 52 6-766 bp Feature: gene Location: 993-2867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-2055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-2 055 bp Feature: domain Description: HNHc Note: nucleases Location: 2595-2754 bp Feature: domain Description: HNHc Note: nucleases Location: 2 595-2 754 bp Feature: gene Location: 3461-4492 bp Feature: domain Description: FtsK_SpoIIIE Location: 4133-4373 bp Feature: domain Description: FtsK_SpoIIIE Location: 4133-4373 bp Feature: gene Location: 4546-4890 bp Feature: domain Description: RelB_DinJ Location: 4756-4882 bp Feature: domain Description: RelB_DinJ Location: 4756-4882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: JVYL01000265.1 Enterococcus faecium strain 1216.rep1_EFCM 1072_3614_1547149_805+,...,659_, whole genome shotgun sequence (3614 bp)
Overview 1 RT 1: 1-3582 bp Neighborhood of RT #1 [1, 3611] RVT-AbiP2 HsdM Rve Feature: gene Location: 1-1434 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 307-772 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 07-772 bp Feature: gene Location: 1772-3250 bp Feature: domain Description: HsdM Location: 1793-3218 bp Feature: domain Description: HsdM Location: 1793 -3 218 bp Feature: gene Location: 3273-3611 bp Feature: domain Description: Rve Location: 3276-3582 bp Feature: domain Description: Rve Location: 3 276-3 582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: JVYL01000115.1 Enterococcus faecium strain 1216.rep1_EFCM 494_42704_695737, whole genome shotgun sequence (42704 bp)
Overview 1 RT 1: 12903-18752 bp Neighborhood of RT #1 [12903, 18775] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 12903-14027 bp Feature: domain Description: PRK06019 Location: 12927-14016 bp Feature: domain Description: PRK06019 Location: 12927-14 016 bp Feature: gene Location: 14040-15335 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 14052-15321 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 14 052-15321 bp Feature: gene Location: 15457-16845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15778-16393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15778-16393 bp Feature: domain Description: GIIM Note: maturase Location: 16450-16666 bp Feature: domain Description: GIIM Note: maturase Location: 164 50-16666 bp Feature: gene Location: 17414-17791 bp Feature: gene Location: 18047-18775 bp Feature: domain Description: PRK09362 Location: 18050-18752 bp Feature: domain Description: PRK09362 Location: 18050-18752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)

Seq: JVYL01000003.1 Enterococcus faecium strain 1216.rep1_EFCM 8_25093_670660, whole genome shotgun sequence (25093 bp)
Overview 1 RT 1: 17029-22876 bp Neighborhood of RT #1 [17029, 22995] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 17029-18723 bp Feature: domain Description: VirB4 Location: 17347-18031 bp Feature: domain Description: VirB4 Location: 17347-18031 bp Feature: gene Location: 18991-19224 bp Feature: gene Location: 19411-21288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19726-20464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19726-20464 bp Feature: domain Description: HNHc Note: nucleases Location: 21022-21175 bp Feature: domain Description: HNHc Note: nucleases Location: 21022-21175 bp Feature: gene Location: 21476-21796 bp Feature: gene Location: 21796-22995 bp Feature: domain Description: Glucosaminidase Location: 22066-22462 bp Feature: domain Description: Glucosaminidase Location: 22066-22462 bp Feature: domain Description: Peptidase_M23 Location: 22639-22876 bp Feature: domain Description: Peptidase_M23 Location: 22639-22876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)