myRT

myRT report for GCA_001053135.1_ASM105313v1

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Seq: JVXU01000292.1 Enterococcus faecium strain 1231_EFCM 1233_5853_150117_58_,...,1004+, whole genome shotgun sequence (5853 bp)
Overview 1 RT 1: 949-5761 bp Neighborhood of RT #1 [949, 5761] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 949-1203 bp Feature: gene Location: 1459-2643 bp Feature: domain Description: HTH_XRE Location: 1489-1633 bp Feature: domain Description: HTH_XRE Location: 1 489-1 633 bp Feature: domain Description: Rol_Rep_N Location: 1666-1930 bp Feature: domain Description: Rol_Rep_N Location: 1 666-1 930 bp Feature: domain Description: Rep_trans Location: 1954-2566 bp Feature: domain Description: Rep_trans Location: 1 954-2566 bp Feature: gene Location: 3523-5433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3856-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3856-4594 bp Feature: domain Description: HNHc Note: nucleases Location: 5149-5314 bp Feature: domain Description: HNHc Note: nucleases Location: 51 49-531 4 bp Feature: gene Location: 5609-5761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVXU01000305.1 Enterococcus faecium strain 1231_EFCM 1254_3830_837389_474+,...,959+, whole genome shotgun sequence (3830 bp)
Overview 1 RT 1: 2-3809 bp Neighborhood of RT #1 [2, 3829] Rve HsdM RVT-AbiP2 Tra8 Feature: gene Location: 2-154 bp Feature: domain Description: Rve Location: 8-125 bp Feature: domain Description: Rve Location: 8-12 5 bp Feature: gene Location: 177-1655 bp Feature: domain Description: HsdM Location: 198-1623 bp Feature: domain Description: HsdM Location: 198-162 3 bp Feature: gene Location: 1993-3468 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2341-2806 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 341-2 806 bp Feature: gene Location: 3446-3829 bp Feature: domain Description: Tra8 Location: 3458-3809 bp Feature: domain Description: Tra8 Location: 3458-3809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVXU01000014.1 Enterococcus faecium strain 1231_EFCM 51_25075_671647, whole genome shotgun sequence (25075 bp)
Overview 1 RT 1: 17020-22867 bp Neighborhood of RT #1 [17020, 22986] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 17020-18714 bp Feature: domain Description: VirB4 Location: 17338-18022 bp Feature: domain Description: VirB4 Location: 173 3 8-18022 bp Feature: gene Location: 18982-19215 bp Feature: gene Location: 19402-21279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19717-20455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19717-20455 bp Feature: domain Description: HNHc Note: nucleases Location: 21013-21166 bp Feature: domain Description: HNHc Note: nucleases Location: 21013 -21166 bp Feature: gene Location: 21467-21787 bp Feature: gene Location: 21787-22986 bp Feature: domain Description: Glucosaminidase Location: 22057-22453 bp Feature: domain Description: Glucosaminidase Location: 22057-22453 bp Feature: domain Description: Peptidase_M23 Location: 22630-22867 bp Feature: domain Description: Peptidase_M23 Location: 2263 0-22867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: JVXU01000187.1 Enterococcus faecium strain 1231_EFCM 778_4603_73049, whole genome shotgun sequence (4603 bp)
Overview 1 RT 1: 1-4593 bp Neighborhood of RT #1 [1, 4601] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 1-273 bp Feature: domain Description: Dcm Location: 4-274 bp Feature: domain Description: Dcm Location: 4 -274 bp Feature: gene Location: 318-698 bp Feature: domain Description: FtsK Location: 333-573 bp Feature: domain Description: FtsK Location: 333-573 bp Feature: gene Location: 800-2674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166-1862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166-1862 bp Feature: domain Description: HNHc Note: nucleases Location: 2402-2561 bp Feature: domain Description: HNHc Note: nucleases Location: 24 02-2561 bp Feature: gene Location: 3268-4299 bp Feature: domain Description: FtsK_SpoIIIE Location: 3940-4180 bp Feature: domain Description: FtsK_SpoIIIE Location: 394 0-4 180 bp Feature: gene Location: 4353-4601 bp Feature: domain Description: RelB_DinJ Location: 4467-4593 bp Feature: domain Description: RelB_DinJ Location: 4 4 67-4 593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: JVXU01000195.1 Enterococcus faecium strain 1231_EFCM 826_30555_434372, whole genome shotgun sequence (30555 bp)
Overview 1 RT 1: 763-6612 bp Neighborhood of RT #1 [763, 6635] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 763-1887 bp Feature: domain Description: PRK06019 Location: 787-1876 bp Feature: domain Description: PRK06019 Location: 787-1876 bp Feature: gene Location: 1900-3195 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1912-3181 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1912-3181 bp Feature: gene Location: 3317-4705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3638-4253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3638-425 3 bp Feature: domain Description: GIIM Note: maturase Location: 4310-4526 bp Feature: domain Description: GIIM Note: maturase Location: 4310-45 26 bp Feature: gene Location: 5274-5651 bp Feature: gene Location: 5907-6635 bp Feature: domain Description: PRK09362 Location: 5910-6612 bp Feature: domain Description: PRK09362 Location: 5 910-6612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)