myRT

myRT report for GCA_001053155.1_ASM105315v1

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Seq: JVWY01000236.1 Enterococcus faecium strain 1251_EFCM 1070_4725_182248_9_,...,653+, whole genome shotgun sequence (4725 bp)
Overview 1 RT 1: 331-4633 bp Neighborhood of RT #1 [331, 4633] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 331-1515 bp Feature: domain Description: HTH_XRE Location: 361-505 bp Feature: domain Description: HTH_XRE Location: 361 -505 bp Feature: domain Description: Rol_Rep_N Location: 538-802 bp Feature: domain Description: Rol_Rep_N Location: 538-802 bp Feature: domain Description: Rep_trans Location: 826-1438 bp Feature: domain Description: Rep_trans Location: 826-1 438 bp Feature: gene Location: 2395-4305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728-3466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728-3466 bp Feature: domain Description: HNHc Note: nucleases Location: 4021-4186 bp Feature: domain Description: HNHc Note: nucleases Location: 4021 -41 86 bp Feature: gene Location: 4493-4633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVWY01000278.1 Enterococcus faecium strain 1251_EFCM 1124_3639_756768_766+,...,836+, whole genome shotgun sequence (3639 bp)
Overview 1 RT 1: 1-2955 bp Neighborhood of RT #1 [1, 3617] Rve HsdM RVT-AbiP2 Feature: gene Location: 1-303 bp Feature: domain Description: Rve Location: 4-274 bp Feature: domain Description: Rve Location: 4-2 74 bp Feature: gene Location: 326-1804 bp Feature: domain Description: HsdM Location: 347-1772 bp Feature: domain Description: HsdM Location: 347-1772 bp Feature: gene Location: 2142-3617 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2490-2955 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 490-2 955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2

Seq: JVWY01000006.1 Enterococcus faecium strain 1251_EFCM 17_4799_102739, whole genome shotgun sequence (4799 bp)
Overview 1 RT 1: 3-4793 bp Neighborhood of RT #1 [3, 4798] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm Feature: gene Location: 3-257 bp Feature: domain Description: RelB_DinJ Location: 123-249 bp Feature: domain Description: RelB_DinJ Location: 123 -249 bp Feature: gene Location: 326-1342 bp Feature: domain Description: FtsK_SpoIIIE Location: 983-1223 bp Feature: domain Description: FtsK_SpoIIIE Location: 983 -1223 bp Feature: gene Location: 1936-3810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302-2998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 02-2998 bp Feature: domain Description: HNHc Note: nucleases Location: 3538-3697 bp Feature: domain Description: HNHc Note: nucleases Location: 3 53 8-3 697 bp Feature: gene Location: 3912-4292 bp Feature: domain Description: FtsK Location: 3927-4167 bp Feature: domain Description: FtsK Location: 3 927-4167 bp Feature: gene Location: 4337-4798 bp Feature: domain Description: Dcm Location: 4340-4793 bp Feature: domain Description: Dcm Location: 43 40-4793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270)

Seq: JVWY01000154.1 Enterococcus faecium strain 1251_EFCM 680_42698_862840, whole genome shotgun sequence (42698 bp)
Overview 1 RT 1: 23927-29788 bp Neighborhood of RT #1 [23927, 29799] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 23927-24655 bp Feature: domain Description: PRK09362 Location: 23930-24632 bp Feature: domain Description: PRK09362 Location: 23930-24 632 bp Feature: gene Location: 24911-25288 bp Feature: gene Location: 25857-27245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26178-26793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26178-26793 bp Feature: domain Description: GIIM Note: maturase Location: 26850-27066 bp Feature: domain Description: GIIM Note: maturase Location: 26850-27066 bp Feature: gene Location: 27367-28662 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27379-28648 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27379-2864 8 bp Feature: gene Location: 28675-29799 bp Feature: domain Description: PRK06019 Location: 28699-29788 bp Feature: domain Description: PRK06019 Location: 28699-29788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)

Seq: JVWY01000208.1 Enterococcus faecium strain 1251_EFCM 918_25087_742272, whole genome shotgun sequence (25087 bp)
Overview 1 RT 1: 2096-7370 bp Neighborhood of RT #1 [2096, 8062] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 2096-3295 bp Feature: domain Description: Glucosaminidase Location: 2366-2762 bp Feature: domain Description: Glucosaminidase Location: 2366-2762 bp Feature: domain Description: Peptidase_M23 Location: 2939-3176 bp Feature: domain Description: Peptidase_M23 Location: 2939-3176 bp Feature: gene Location: 3295-3615 bp Feature: gene Location: 3803-5680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4118-4856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4118-485 6 bp Feature: domain Description: HNHc Note: nucleases Location: 5414-5567 bp Feature: domain Description: HNHc Note: nucleases Location: 5 414-5 5 67 bp Feature: gene Location: 5867-6100 bp Feature: gene Location: 6368-8062 bp Feature: domain Description: VirB4 Location: 6686-7370 bp Feature: domain Description: VirB4 Location: 6686-7370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)