myRT

myRT report for GCA_001053215.1_ASM105321v1

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Seq: JVWT01000337.1 Enterococcus faecium strain 1256_EFCM 1272_5853_115388_687+,...,1037+, whole genome shotgun sequence (5853 bp)
Overview 1 RT 1: 949-5761 bp Neighborhood of RT #1 [949, 5761] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 949-1203 bp Feature: gene Location: 1459-2643 bp Feature: domain Description: HTH_XRE Location: 1489-1633 bp Feature: domain Description: HTH_XRE Location: 1 489-1 633 bp Feature: domain Description: Rol_Rep_N Location: 1666-1930 bp Feature: domain Description: Rol_Rep_N Location: 1 666-1 930 bp Feature: domain Description: Rep_trans Location: 1954-2566 bp Feature: domain Description: Rep_trans Location: 1 954-2566 bp Feature: gene Location: 3523-5433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3856-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3856-4594 bp Feature: domain Description: HNHc Note: nucleases Location: 5149-5314 bp Feature: domain Description: HNHc Note: nucleases Location: 51 49-531 4 bp Feature: gene Location: 5621-5761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVWT01000348.1 Enterococcus faecium strain 1256_EFCM 1285_3830_729072_609+,...,490_, whole genome shotgun sequence (3830 bp)
Overview 1 RT 1: 2-3800 bp Neighborhood of RT #1 [2, 3829] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 2-385 bp Feature: domain Description: Tra8 Location: 14-365 bp Feature: domain Description: Tra8 Location: 14-365 bp Feature: gene Location: 363-1838 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 711-1176 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 711-1176 bp Feature: gene Location: 2176-3654 bp Feature: domain Description: HsdM Location: 2197-3622 bp Feature: domain Description: HsdM Location: 2 197-362 2 bp Feature: gene Location: 3677-3829 bp Feature: domain Description: Rve Location: 3683-3800 bp Feature: domain Description: Rve Location: 3683-3800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: JVWT01000020.1 Enterococcus faecium strain 1256_EFCM 54_25075_492801, whole genome shotgun sequence (25075 bp)
Overview 1 RT 1: 17020-22867 bp Neighborhood of RT #1 [17020, 22986] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 17020-18714 bp Feature: domain Description: VirB4 Location: 17338-18022 bp Feature: domain Description: VirB4 Location: 173 3 8-18022 bp Feature: gene Location: 18982-19215 bp Feature: gene Location: 19402-21279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19717-20455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19717-20455 bp Feature: domain Description: HNHc Note: nucleases Location: 21013-21166 bp Feature: domain Description: HNHc Note: nucleases Location: 21013 -21166 bp Feature: gene Location: 21467-21787 bp Feature: gene Location: 21787-22986 bp Feature: domain Description: Glucosaminidase Location: 22057-22453 bp Feature: domain Description: Glucosaminidase Location: 22057-22453 bp Feature: domain Description: Peptidase_M23 Location: 22630-22867 bp Feature: domain Description: Peptidase_M23 Location: 2263 0-22867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: JVWT01000210.1 Enterococcus faecium strain 1256_EFCM 849_30555_349921, whole genome shotgun sequence (30555 bp)
Overview 1 RT 1: 23921-29782 bp Neighborhood of RT #1 [23921, 29793] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 23921-24649 bp Feature: domain Description: PRK09362 Location: 23924-24626 bp Feature: domain Description: PRK09362 Location: 23924 -24 626 bp Feature: gene Location: 24905-25282 bp Feature: gene Location: 25851-27239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26172-26787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26172-26787 bp Feature: domain Description: GIIM Note: maturase Location: 26844-27060 bp Feature: domain Description: GIIM Note: maturase Location: 2684 4 -27060 bp Feature: gene Location: 27361-28656 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27373-28642 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27373-2864 2 bp Feature: gene Location: 28669-29793 bp Feature: domain Description: PRK06019 Location: 28693-29782 bp Feature: domain Description: PRK06019 Location: 28693-29782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)

Seq: JVWT01000244.1 Enterococcus faecium strain 1256_EFCM 938_4603_61366, whole genome shotgun sequence (4603 bp)
Overview 1 RT 1: 3-4601 bp Neighborhood of RT #1 [3, 4600] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm Feature: gene Location: 3-251 bp Feature: domain Description: RelB_DinJ Location: 117-243 bp Feature: domain Description: RelB_DinJ Location: 117-243 bp Feature: gene Location: 320-1336 bp Feature: domain Description: FtsK_SpoIIIE Location: 977-1217 bp Feature: domain Description: FtsK_SpoIIIE Location: 977-1217 bp Feature: gene Location: 1930-3804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296-2992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2296-2992 bp Feature: domain Description: HNHc Note: nucleases Location: 3532-3691 bp Feature: domain Description: HNHc Note: nucleases Location: 35 32-3691 bp Feature: gene Location: 3906-4286 bp Feature: domain Description: FtsK Location: 3921-4161 bp Feature: domain Description: FtsK Location: 3921-4161 bp Feature: gene Location: 4331-4600 bp Feature: domain Description: Dcm Location: 4334-4601 bp Feature: domain Description: Dcm Location: 4334-4601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270)