myRT

myRT report for GCA_001053395.1_ASM105339v1

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Seq: JVTR01000035.1 Enterobacter kobei strain 1323_ECLO 456_38629_534345, whole genome shotgun sequence (38629 bp)
Overview 1 RT 1: 34129-37956 bp Neighborhood of RT #1 [34129, 37956] PRK09692 RVT-Retrons Feature: gene Location: 34129-35238 bp Feature: domain Description: PRK09692 Location: 34138-35230 bp Feature: domain Description: PRK09692 Location: 341 38-35230 bp Feature: gene Location: 35241-36281 bp Feature: gene Location: 36281-37465 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36431-37010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36431 -3701 0 bp Feature: gene Location: 37771-37956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons

Seq: JVTR01000117.1 Enterobacter kobei strain 1323_ECLO 800_12829_382410_402+,...,680_, whole genome shotgun sequence (12829 bp)
Overview 1 RT 1: 5560-10866 bp Neighborhood of RT #1 [5560, 10874] StbA PRK10276 RVT_N RVT-GII GIIM HNHc umuC Feature: gene Location: 5560-6534 bp Feature: domain Description: StbA Location: 5569-6511 bp Feature: domain Description: StbA Location: 5569-6511 bp Feature: gene Location: 6764-6898 bp Feature: domain Description: PRK10276 Location: 6815-6878 bp Feature: domain Description: PRK102 76 Location: 6815-6878 bp Feature: gene Location: 7488-9203 bp Feature: domain Description: RVT_N Location: 7542-7785 bp Feature: domain Description: RVT_N Location: 7542 -7785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7830-8481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7830-8481 bp Feature: domain Description: GIIM Note: maturase Location: 8535-8766 bp Feature: domain Description: GIIM Note: maturase Location: 8535-8766 bp Feature: domain Description: HNHc Note: nucleases Location: 9000-9156 bp Feature: domain Description: HNHc Note: nucleases Location: 9000-9156 bp Feature: gene Location: 9277-9582 bp Feature: gene Location: 9603-10874 bp Feature: domain Description: umuC Location: 9606-10866 bp Feature: domain Description: umuC Location: 9606-10866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), umuC (PRK03609)

Seq: JVTR01000153.1 Enterobacter kobei strain 1323_ECLO 837_208770_2951473_652_,...,389_, whole genome shotgun sequence (208770 bp)
Overview 1 RT 1: 5609-16625 bp Neighborhood of RT #1 [5609, 16660] RMtype1_S_EcoEI-TRD1-CR1_like RMtype1_S_EcoEI-TRD1-CR1_like HsdM RVT-UG1 RT_Bac_retron_II Arm-DNA-bind_3 INT_P4_C DjlA Feature: gene Location: 5609-6844 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 5624-6104 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 5624-6104 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 6602-6746 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 6602-6746 bp Feature: gene Location: 6985-9345 bp Feature: domain Description: HsdM Location: 7009-8410 bp Feature: domain Description: HsdM Location: 7009-8410 bp Feature: gene Location: 9553-13329 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 10171-10678 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 10171-10678 bp Feature: domain Description: RT_Bac_retron_II Location: 12484-12640 bp Feature: domain Description: RT_Bac_retron_II Location: 12484-12640 bp Feature: gene Location: 13622-14929 bp Feature: domain Description: Arm-DNA-bind_3 Location: 13637-13904 bp Feature: domain Description: Arm-DNA-bind_3 Location: 13 63 7-13 904 bp Feature: domain Description: INT_P4_C Location: 14321-14870 bp Feature: domain Description: INT_P4_C Location: 143 21-14870 bp Feature: gene Location: 15491-16660 bp Feature: domain Description: DjlA Location: 16148-16625 bp Feature: domain Description: DjlA Location: 16148-16625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_EcoEI-TRD1-CR1_like (cd17260), HsdM (COG0286), RVT-UG1, RT_Bac_retron_II (cd03487), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), DjlA (COG1076)