myRT

myRT report for GCA_001054055.1_ASM105405v1

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Seq: JVZE01000338.1 Enterococcus faecium strain 1199_EFCM 1378_4877_113258_468_,...,1093_, whole genome shotgun sequence (4877 bp)
Overview 1 RT 1: 3-4785 bp Neighborhood of RT #1 [3, 4785] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 3-227 bp Feature: gene Location: 483-1667 bp Feature: domain Description: HTH_XRE Location: 513-657 bp Feature: domain Description: HTH_XRE Location: 51 3-657 bp Feature: domain Description: Rol_Rep_N Location: 690-954 bp Feature: domain Description: Rol_Rep_N Location: 690-954 bp Feature: domain Description: Rep_trans Location: 978-1590 bp Feature: domain Description: Rep_trans Location: 978-1 590 bp Feature: gene Location: 2547-4457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880-3618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880-361 8 bp Feature: domain Description: HNHc Note: nucleases Location: 4173-4338 bp Feature: domain Description: HNHc Note: nucleases Location: 41 73-4338 bp Feature: gene Location: 4645-4785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVZE01000368.1 Enterococcus faecium strain 1199_EFCM 1413_12089_3034861_456_,...,1381_, whole genome shotgun sequence (12089 bp)
Overview 1 RT 1: 17-4483 bp Neighborhood of RT #1 [17, 4483] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 17-1495 bp Feature: domain Description: HsdM Location: 38-1463 bp Feature: domain Description: HsdM Location: 38-1463 bp Feature: gene Location: 1833-3308 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2181-2646 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 181-2 646 bp Feature: gene Location: 3286-4239 bp Feature: domain Description: Tra8 Location: 3289-4216 bp Feature: domain Description: Tra8 Location: 32 89-42 16 bp Feature: gene Location: 4322-4483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: JVZE01000134.1 Enterococcus faecium strain 1199_EFCM 521_25067_505020, whole genome shotgun sequence (25067 bp)
Overview 1 RT 1: 2086-7360 bp Neighborhood of RT #1 [2086, 8052] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 2086-3285 bp Feature: domain Description: Glucosaminidase Location: 2356-2752 bp Feature: domain Description: Glucosaminidase Location: 23 56-2752 bp Feature: domain Description: Peptidase_M23 Location: 2929-3166 bp Feature: domain Description: Peptidase_M23 Location: 2929-3 166 bp Feature: gene Location: 3285-3605 bp Feature: gene Location: 3793-5670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4108-4846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4108-4846 bp Feature: domain Description: HNHc Note: nucleases Location: 5404-5557 bp Feature: domain Description: HNHc Note: nucleases Location: 5404-5557 bp Feature: gene Location: 5857-6090 bp Feature: gene Location: 6358-8052 bp Feature: domain Description: VirB4 Location: 6676-7360 bp Feature: domain Description: VirB4 Location: 6676-73 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: JVZE01000185.1 Enterococcus faecium strain 1199_EFCM 771_4595_66707, whole genome shotgun sequence (4595 bp)
Overview 1 RT 1: 2-4591 bp Neighborhood of RT #1 [2, 4593] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm Feature: gene Location: 2-247 bp Feature: domain Description: RelB_DinJ Location: 113-239 bp Feature: domain Description: RelB_DinJ Location: 113-239 bp Feature: gene Location: 316-1332 bp Feature: domain Description: FtsK_SpoIIIE Location: 973-1213 bp Feature: domain Description: FtsK_SpoIIIE Location: 973-1213 bp Feature: gene Location: 1926-3800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2292-2988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2292-2988 bp Feature: domain Description: HNHc Note: nucleases Location: 3528-3687 bp Feature: domain Description: HNHc Note: nucleases Location: 3528-3687 bp Feature: gene Location: 3902-4282 bp Feature: domain Description: FtsK Location: 3917-4157 bp Feature: domain Description: FtsK Location: 3917-4 157 bp Feature: gene Location: 4327-4593 bp Feature: domain Description: Dcm Location: 4330-4591 bp Feature: domain Description: Dcm Location: 4 330-4 591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270)

Seq: JVZE01000244.1 Enterococcus faecium strain 1199_EFCM 991_30547_373286, whole genome shotgun sequence (30547 bp)
Overview 1 RT 1: 759-6608 bp Neighborhood of RT #1 [759, 6631] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 759-1883 bp Feature: domain Description: PRK06019 Location: 783-1872 bp Feature: domain Description: PRK06019 Location: 783-1872 bp Feature: gene Location: 1896-3191 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1908-3177 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1908-3177 bp Feature: gene Location: 3313-4701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634-4249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634-4249 bp Feature: domain Description: GIIM Note: maturase Location: 4306-4522 bp Feature: domain Description: GIIM Note: maturase Location: 4306-45 22 bp Feature: gene Location: 5270-5647 bp Feature: gene Location: 5903-6631 bp Feature: domain Description: PRK09362 Location: 5906-6608 bp Feature: domain Description: PRK09362 Location: 5 906-6608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)