myRT

myRT report for GCA_001054105.1_ASM105410v1

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Seq: JVYK01000556.1 Enterococcus faecium strain 1216.rep2_EFCM 2285_9720_125253, whole genome shotgun sequence (9720 bp)
Overview 1 RT 1: 1689-7536 bp Neighborhood of RT #1 [1689, 7655] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 1689-3383 bp Feature: domain Description: VirB4 Location: 2007-2691 bp Feature: domain Description: VirB4 Location: 2007-2691 bp Feature: gene Location: 3651-3884 bp Feature: gene Location: 4071-5948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4386-5124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4386-51 24 bp Feature: domain Description: HNHc Note: nucleases Location: 5682-5835 bp Feature: domain Description: HNHc Note: nucleases Location: 5682-5835 bp Feature: gene Location: 6136-6456 bp Feature: gene Location: 6456-7655 bp Feature: domain Description: Glucosaminidase Location: 6726-7122 bp Feature: domain Description: Glucosaminidase Location: 6726-71 22 bp Feature: domain Description: Peptidase_M23 Location: 7299-7536 bp Feature: domain Description: Peptidase_M23 Location: 7299-7536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: JVYK01000663.1 Enterococcus faecium strain 1216.rep2_EFCM 2692_3363_56130_2153_,2574_,2236_, whole genome shotgun sequence (3363 bp)
Overview 1 RT 1: 3-3359 bp Neighborhood of RT #1 [3, 3361] ArdA RVT-GII HNHc DUF3789 Feature: gene Location: 3-182 bp Feature: domain Description: ArdA Location: 21-183 bp Feature: domain Description: ArdA Location: 2 1-183 bp Feature: gene Location: 195-347 bp Feature: gene Location: 523-2433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856-1594 bp Feature: domain Description: HNHc Note: nucleases Location: 2149-2314 bp Feature: domain Description: HNHc Note: nucleases Location: 2 149-2 314 bp Feature: gene Location: 3203-3361 bp Feature: domain Description: DUF3789 Location: 3275-3359 bp Feature: domain Description: DUF3789 Location: 32 75-3359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664)

Seq: JVYK01000682.1 Enterococcus faecium strain 1216.rep2_EFCM 2711_4316_963268_2161_,2727+,750+, whole genome shotgun sequence (4316 bp)
Overview 1 RT 1: 97-4288 bp Neighborhood of RT #1 [97, 4314] Tra8 RVT-AbiP2 HsdM Feature: gene Location: 97-1050 bp Feature: domain Description: Tra8 Location: 100-1027 bp Feature: domain Description: Tra8 Location: 100-1027 bp Feature: gene Location: 1116-2504 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1377-1842 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 13 77-1842 bp Feature: gene Location: 2842-4314 bp Feature: domain Description: HsdM Location: 2863-4288 bp Feature: domain Description: HsdM Location: 2863 -4288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286)

Seq: JVYK01000131.1 Enterococcus faecium strain 1216.rep2_EFCM 541_17733_148440, whole genome shotgun sequence (17733 bp)
Overview 1 RT 1: 673-6522 bp Neighborhood of RT #1 [673, 6545] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 673-1797 bp Feature: domain Description: PRK06019 Location: 697-1786 bp Feature: domain Description: PRK06019 Location: 697-1786 bp Feature: gene Location: 1810-3105 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1822-3091 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1822-3091 bp Feature: gene Location: 3227-4615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354 8-4 163 bp Feature: domain Description: GIIM Note: maturase Location: 4220-4436 bp Feature: domain Description: GIIM Note: maturase Location: 4 220-4 4 36 bp Feature: gene Location: 5184-5561 bp Feature: gene Location: 5817-6545 bp Feature: domain Description: PRK09362 Location: 5820-6522 bp Feature: domain Description: PRK09362 Location: 5820-6522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)

Seq: JVYK01000205.1 Enterococcus faecium strain 1216.rep2_EFCM 862_2778_29441, whole genome shotgun sequence (2778 bp)
Overview 1 RT 1: 710-2471 bp Neighborhood of RT #1 [710, 2584] RVT-GII HNHc Feature: gene Location: 710-2584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1772 bp Feature: domain Description: HNHc Note: nucleases Location: 2312-2471 bp Feature: domain Description: HNHc Note: nucleases Location: 2312-2471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)