myRT

myRT report for GCA_001054215.1_ASM105421v1

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Seq: JVXN01000278.1 Enterococcus faecium strain 1238_EFCM 1062_4725_118596_14_,...,583_, whole genome shotgun sequence (4725 bp)
Overview 1 RT 1: 331-4633 bp Neighborhood of RT #1 [331, 4633] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 331-1515 bp Feature: domain Description: HTH_XRE Location: 361-505 bp Feature: domain Description: HTH_XRE Location: 361 -505 bp Feature: domain Description: Rol_Rep_N Location: 538-802 bp Feature: domain Description: Rol_Rep_N Location: 538-802 bp Feature: domain Description: Rep_trans Location: 826-1438 bp Feature: domain Description: Rep_trans Location: 826-1 438 bp Feature: gene Location: 2395-4305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728-3466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728-3466 bp Feature: domain Description: HNHc Note: nucleases Location: 4021-4186 bp Feature: domain Description: HNHc Note: nucleases Location: 4021 -41 86 bp Feature: gene Location: 4493-4633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507)

Seq: JVXN01000312.1 Enterococcus faecium strain 1238_EFCM 1103_3678_682950_855+,...,1008_, whole genome shotgun sequence (3678 bp)
Overview 1 RT 1: 23-3646 bp Neighborhood of RT #1 [23, 3675] RVT-AbiP2 HsdM Rve Feature: gene Location: 23-1498 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 371-836 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 371-836 bp Feature: gene Location: 1836-3314 bp Feature: domain Description: HsdM Location: 1857-3282 bp Feature: domain Description: HsdM Location: 1857-32 82 bp Feature: gene Location: 3337-3675 bp Feature: domain Description: Rve Location: 3340-3646 bp Feature: domain Description: Rve Location: 3340-3646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: JVXN01000173.1 Enterococcus faecium strain 1238_EFCM 651_42698_546143, whole genome shotgun sequence (42698 bp)
Overview 1 RT 1: 23927-29788 bp Neighborhood of RT #1 [23927, 29799] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 23927-24655 bp Feature: domain Description: PRK09362 Location: 23930-24632 bp Feature: domain Description: PRK093 62 Location: 23 93 0-2463 2 bp Feature: gene Location: 24911-25288 bp Feature: gene Location: 25857-27245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26178-26793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26178-26793 bp Feature: domain Description: GIIM Note: maturase Location: 26850-27066 bp Feature: domain Description: GIIM Note: maturase Location: 26850-27066 bp Feature: gene Location: 27367-28662 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 27379-28648 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 273 79-28648 bp Feature: gene Location: 28675-29799 bp Feature: domain Description: PRK06019 Location: 28699-29788 bp Feature: domain Description: PRK06019 Location: 28699-29788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)

Seq: JVXN01000190.1 Enterococcus faecium strain 1238_EFCM 699_25087_603926, whole genome shotgun sequence (25087 bp)
Overview 1 RT 1: 17026-22873 bp Neighborhood of RT #1 [17026, 22992] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 17026-18720 bp Feature: domain Description: VirB4 Location: 17344-18028 bp Feature: domain Description: VirB4 Location: 1734 4 -18028 bp Feature: gene Location: 18988-19221 bp Feature: gene Location: 19408-21285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19723-20461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19723-204 61 bp Feature: domain Description: HNHc Note: nucleases Location: 21019-21172 bp Feature: domain Description: HNHc Note: nucleases Location: 21019-21172 bp Feature: gene Location: 21473-21793 bp Feature: gene Location: 21793-22992 bp Feature: domain Description: Glucosaminidase Location: 22063-22459 bp Feature: domain Description: Glucosaminidase Location: 22063-224 59 bp Feature: domain Description: Peptidase_M23 Location: 22636-22873 bp Feature: domain Description: Peptidase_M23 Location: 22636-22873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: JVXN01000193.1 Enterococcus faecium strain 1238_EFCM 715_4799_70228, whole genome shotgun sequence (4799 bp)
Overview 1 RT 1: 2-4789 bp Neighborhood of RT #1 [2, 4797] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 2-463 bp Feature: domain Description: Dcm Location: 5-458 bp Feature: domain Description: Dcm Location: 5 -45 8 bp Feature: gene Location: 508-888 bp Feature: domain Description: FtsK Location: 523-763 bp Feature: domain Description: FtsK Location: 5 23-763 bp Feature: gene Location: 990-2864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-2052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135 6-205 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2592-2751 bp Feature: domain Description: HNHc Note: nucleases Location: 25 92-275 1 bp Feature: gene Location: 3458-4489 bp Feature: domain Description: FtsK_SpoIIIE Location: 4130-4370 bp Feature: domain Description: FtsK_SpoIIIE Location: 4130-4370 bp Feature: gene Location: 4543-4797 bp Feature: domain Description: RelB_DinJ Location: 4663-4789 bp Feature: domain Description: RelB_DinJ Location: 4663-4789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)